Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32980

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,797,784	-				-0.3
2,797,816	+				-0.4
2,798,334	+		RR42_RS32975	0.56	-1.0
2,798,335	-		RR42_RS32975	0.56	-1.7
2,798,640	-				-0.5
2,798,640	-				+0.4
2,798,769	+				-1.5
2,798,770	-				-1.4
2,798,770	-				-1.1
2,798,771	+				-1.4
2,798,772	-				+0.2
2,798,774	-				+0.0
2,798,892	+				-1.6
2,798,893	-				+0.6
2,798,953	-				+0.9
2,799,006	+				+0.4
2,799,006	+				+0.7
2,799,006	+				+1.1
2,799,007	-				+0.2
2,799,007	-				+1.3
2,799,007	-				+0.5
2,799,064	+		RR42_RS32980	0.11	-0.5
2,799,135	+		RR42_RS32980	0.14	+0.3
2,799,136	-		RR42_RS32980	0.14	-0.7
2,799,136	-		RR42_RS32980	0.14	-0.7
2,799,270	-		RR42_RS32980	0.19	-1.9
2,799,270	-		RR42_RS32980	0.19	-1.3
2,799,276	+		RR42_RS32980	0.19	-0.1
2,799,276	+		RR42_RS32980	0.19	-1.1
2,799,276	+		RR42_RS32980	0.19	+0.3
2,799,277	-		RR42_RS32980	0.19	+0.5
2,799,277	-		RR42_RS32980	0.19	+0.9
2,799,354	+		RR42_RS32980	0.22	-0.4
2,799,354	+		RR42_RS32980	0.22	-0.1
2,799,355	-		RR42_RS32980	0.22	+0.7
2,799,357	+		RR42_RS32980	0.22	-0.4
2,799,357	+		RR42_RS32980	0.22	+0.1
2,799,357	+		RR42_RS32980	0.22	+0.9
2,799,358	-		RR42_RS32980	0.22	-0.4
2,799,524	-		RR42_RS32980	0.28	-0.1
2,799,618	+		RR42_RS32980	0.32	-1.4
2,799,618	+		RR42_RS32980	0.32	-0.7
2,799,618	+		RR42_RS32980	0.32	-1.7
2,799,619	-		RR42_RS32980	0.32	-0.8
2,799,621	+		RR42_RS32980	0.32	+0.4
2,799,621	+		RR42_RS32980	0.32	-0.7
2,799,621	+		RR42_RS32980	0.32	+0.0
2,799,622	-		RR42_RS32980	0.32	-0.4
2,799,622	-		RR42_RS32980	0.32	+0.3
2,799,622	-		RR42_RS32980	0.32	-0.7
2,799,625	+		RR42_RS32980	0.32	-0.2
2,799,625	+		RR42_RS32980	0.32	+0.4
2,799,625	+		RR42_RS32980	0.32	+0.7
2,799,626	-		RR42_RS32980	0.32	+0.5
2,799,626	-		RR42_RS32980	0.32	+0.9
2,799,626	-		RR42_RS32980	0.32	-1.1
2,799,626	-		RR42_RS32980	0.32	+0.6
2,799,627	+		RR42_RS32980	0.32	+0.9
2,799,627	+		RR42_RS32980	0.32	-0.7
2,799,627	+		RR42_RS32980	0.32	-0.5
2,799,627	+		RR42_RS32980	0.32	+1.0
2,799,628	-		RR42_RS32980	0.32	+1.0
2,799,628	-		RR42_RS32980	0.32	-0.1
2,799,644	-		RR42_RS32980	0.33	-0.4
2,799,660	+		RR42_RS32980	0.33	-0.8
2,799,780	+		RR42_RS32980	0.38	+2.1
2,799,781	-		RR42_RS32980	0.38	-0.2
2,799,801	+		RR42_RS32980	0.39	-0.5
2,799,801	+		RR42_RS32980	0.39	+0.3
2,799,802	-		RR42_RS32980	0.39	-0.5
2,800,032	+		RR42_RS32980	0.47	-0.1
2,800,033	-		RR42_RS32980	0.47	+1.7
2,800,065	+		RR42_RS32980	0.48	-0.1
2,800,099	-		RR42_RS32980	0.50	+0.7
2,800,233	+		RR42_RS32980	0.55	+0.1
2,800,305	+		RR42_RS32980	0.57	-0.5
2,800,305	+		RR42_RS32980	0.57	+0.3
2,800,661	-		RR42_RS32980	0.71	-1.6
2,800,786	-		RR42_RS32980	0.75	-1.0
2,800,786	-		RR42_RS32980	0.75	-0.2
2,800,806	+		RR42_RS32980	0.76	-0.4
2,800,807	-		RR42_RS32980	0.76	+0.9
2,800,807	-		RR42_RS32980	0.76	+0.2
2,800,873	-		RR42_RS32980	0.79	+0.2
2,800,987	-		RR42_RS32980	0.83	-0.3
2,801,100	+		RR42_RS32980	0.87	-1.9
2,801,100	+		RR42_RS32980	0.87	+1.2
2,801,101	-		RR42_RS32980	0.87	+0.5
2,801,253	+				+0.0
2,801,261	+				+0.3
2,801,476	+				+0.4
2,801,477	-				-1.4
2,801,594	-				-2.1
2,801,594	-				-0.7
2,801,838	-		RR42_RS32985	0.34	-0.9
2,801,924	-		RR42_RS32985	0.43	-0.4
2,801,924	-		RR42_RS32985	0.43	-0.1
2,801,924	-		RR42_RS32985	0.43	+0.8
2,801,930	+		RR42_RS32985	0.43	-2.3
2,801,930	+		RR42_RS32985	0.43	-1.5
2,801,930	+		RR42_RS32985	0.43	+0.4
2,801,930	+		RR42_RS32985	0.43	+0.5
2,801,930	+		RR42_RS32985	0.43	-1.5
2,801,930	+		RR42_RS32985	0.43	-0.0
2,801,931	-		RR42_RS32985	0.43	-0.4
2,801,931	-		RR42_RS32985	0.43	+0.7
2,801,931	-		RR42_RS32985	0.43	+0.1
2,801,931	-		RR42_RS32985	0.43	+0.2
2,802,016	+		RR42_RS32985	0.52	+0.2
2,802,017	-		RR42_RS32985	0.52	-0.1
2,802,212	+		RR42_RS32985	0.72	+0.9
2,802,212	+		RR42_RS32985	0.72	+0.9
2,802,212	+		RR42_RS32985	0.72	+0.3
2,802,213	-		RR42_RS32985	0.72	+0.2
2,802,213	-		RR42_RS32985	0.72	+0.7
2,802,213	-		RR42_RS32985	0.72	+0.0
2,802,213	-		RR42_RS32985	0.72	-0.9
2,802,213	-		RR42_RS32985	0.72	-0.1
2,802,215	-		RR42_RS32985	0.72	-0.1
2,802,215	-		RR42_RS32985	0.72	+0.2