Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32480

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,683,275	+				+1.4
2,683,276	-				+1.2
2,683,276	-				+0.9
2,683,384	+		RR42_RS32475	0.15	-0.9
2,683,446	+		RR42_RS32475	0.21	-0.9
2,683,447	-		RR42_RS32475	0.21	-2.3
2,683,447	-		RR42_RS32475	0.21	+0.9
2,683,482	+		RR42_RS32475	0.25	+0.3
2,683,533	+				-0.1
2,683,533	+		RR42_RS32475	0.30	+0.6
2,683,534	-		RR42_RS32475	0.30	-0.2
2,683,833	-		RR42_RS32475	0.62	-0.1
2,683,966	+		RR42_RS32475	0.75	-0.9
2,684,070	+		RR42_RS32475	0.86	-0.7
2,684,071	-		RR42_RS32475	0.86	-0.1
2,684,092	-		RR42_RS32475	0.89	+1.2
2,684,319	-		RR42_RS32480	0.12	+1.1
2,684,417	-		RR42_RS32480	0.25	-0.1
2,684,485	+		RR42_RS32480	0.34	-0.1
2,684,485	+		RR42_RS32480	0.34	+0.0
2,684,593	-		RR42_RS32480	0.48	+1.9
2,684,644	-		RR42_RS32480	0.54	+0.7
2,684,675	-		RR42_RS32480	0.58	+0.0
2,684,752	+		RR42_RS32480	0.68	+1.0
2,684,843	-		RR42_RS32480	0.80	+0.7
2,685,078	+				+0.9
2,685,078	+				+0.5
2,685,079	-				-0.4
2,685,090	+				-0.0
2,685,303	+				+4.5
2,685,304	-				+0.1
2,685,304	-				+1.1
2,685,304	-				+0.5
2,685,323	+		RR42_RS32485	0.11	+0.2
2,685,406	-		RR42_RS32485	0.15	-1.0
2,685,542	+		RR42_RS32485	0.22	+0.5
2,685,542	+		RR42_RS32485	0.22	+0.6
2,685,543	-		RR42_RS32485	0.22	+0.5
2,685,543	-		RR42_RS32485	0.22	-1.1
2,685,543	-		RR42_RS32485	0.22	+1.6
2,685,640	+		RR42_RS32485	0.27	+1.1
2,685,640	+		RR42_RS32485	0.27	+0.5