Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32260

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,624,090	-		RR42_RS32250	0.74	-2.3
2,624,090	-		RR42_RS32250	0.74	-2.2
2,624,090	-		RR42_RS32250	0.74	-4.0
2,624,090	-		RR42_RS32250	0.74	-3.2
2,624,090	-		RR42_RS32250	0.74	-4.4
2,624,093	+		RR42_RS32250	0.75	-2.6
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,093	+		RR42_RS32250	0.75	-4.4
2,624,093	+		RR42_RS32250	0.75	-4.5
2,624,093	+		RR42_RS32250	0.75	-4.1
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,094	-		RR42_RS32250	0.75	-4.9
2,624,114	+		RR42_RS32250	0.77	-3.1
2,624,115	-		RR42_RS32250	0.77	-4.7
2,624,132	+		RR42_RS32250	0.79	-3.3
2,624,132	+		RR42_RS32250	0.79	-3.5
2,624,133	-		RR42_RS32250	0.80	-2.1
2,625,121	+				+0.9
2,625,199	+				-0.7
2,625,200	-				-0.8
2,625,200	-				-1.4
2,625,301	+		RR42_RS32260	0.14	-3.1
2,625,301	+		RR42_RS32260	0.14	-2.6
2,625,302	-		RR42_RS32260	0.14	-3.3
2,625,322	+		RR42_RS32260	0.15	-2.5
2,625,457	+		RR42_RS32260	0.22	-0.1
2,625,457	+		RR42_RS32260	0.22	-3.1
2,625,463	+		RR42_RS32260	0.22	-2.7
2,625,463	+		RR42_RS32260	0.22	-2.3
2,625,463	+		RR42_RS32260	0.22	-2.3
2,625,463	+		RR42_RS32260	0.22	-3.0
2,625,463	+		RR42_RS32260	0.22	-3.8
2,625,463	+		RR42_RS32260	0.22	-4.0
2,625,464	-		RR42_RS32260	0.22	-2.1
2,625,464	-		RR42_RS32260	0.22	+0.3
2,625,464	-		RR42_RS32260	0.22	-4.5
2,625,464	-		RR42_RS32260	0.22	-3.2
2,625,484	+		RR42_RS32260	0.23	-1.1
2,625,484	+		RR42_RS32260	0.23	-1.9
2,625,650	+		RR42_RS32260	0.31	-2.8
2,625,662	-		RR42_RS32260	0.32	-0.8
2,625,662	-		RR42_RS32260	0.32	-2.7
2,625,662	-		RR42_RS32260	0.32	-2.3
2,625,662	-		RR42_RS32260	0.32	-1.4
2,625,662	-		RR42_RS32260	0.32	-1.4
2,625,878	-		RR42_RS32260	0.43	-3.8
2,626,287	+		RR42_RS32260	0.63	-3.1
2,626,492	+		RR42_RS32260	0.73	-2.7
2,626,492	+				-0.7
2,626,492	+		RR42_RS32260	0.73	-1.5
2,626,493	-		RR42_RS32260	0.73	-1.3
2,626,493	-		RR42_RS32260	0.73	-3.1
2,626,493	-		RR42_RS32260	0.73	-4.6
2,626,493	-		RR42_RS32260	0.73	-0.8
2,626,608	-		RR42_RS32260	0.79	-1.5
2,626,608	-		RR42_RS32260	0.79	-3.7
2,626,711	+		RR42_RS32260	0.84	-2.8
2,626,711	+		RR42_RS32260	0.84	-3.3
2,626,712	-		RR42_RS32260	0.84	+0.5
2,626,806	-		RR42_RS32260	0.89	-3.6
2,626,843	+				-2.4
2,626,844	-				-3.8
2,626,844	-				-0.9
2,626,861	+				-1.1
2,626,861	+				-3.7
2,627,016	+				+0.4
2,627,066	+				-3.3
2,627,067	-				+1.9
2,627,157	+				-2.0
2,627,240	-		RR42_RS32265	0.13	+2.6
2,627,314	+		RR42_RS32265	0.22	+1.2
2,627,315	-		RR42_RS32265	0.22	+2.1
2,627,317	+		RR42_RS32265	0.22	+0.9
2,627,317	+		RR42_RS32265	0.22	+1.4
2,627,318	-		RR42_RS32265	0.22	+2.4
2,627,434	+		RR42_RS32265	0.36	-2.0
2,627,435	-		RR42_RS32265	0.36	+2.1
2,627,435	-		RR42_RS32265	0.36	+2.8
2,627,521	-		RR42_RS32265	0.46	+2.1
2,627,593	+		RR42_RS32265	0.55	-0.5
2,627,593	+		RR42_RS32265	0.55	-0.3
2,627,594	-		RR42_RS32265	0.55	+2.8
2,627,594	-		RR42_RS32265	0.55	+3.3
2,627,594	-		RR42_RS32265	0.55	+2.0
2,627,601	+		RR42_RS32265	0.56	-0.4
2,627,601	+		RR42_RS32265	0.56	-2.0
2,627,601	+		RR42_RS32265	0.56	+0.5
2,627,602	-		RR42_RS32265	0.56	+2.1
2,627,607	-		RR42_RS32265	0.57	+2.3
2,627,746	+		RR42_RS32265	0.73	-0.3
2,627,747	-		RR42_RS32265	0.73	+2.7
2,627,747	-		RR42_RS32265	0.73	+1.0
2,627,822	+		RR42_RS32265	0.82	-2.1
2,627,822	+		RR42_RS32265	0.82	-2.5
2,627,823	-		RR42_RS32265	0.82	+2.9
2,627,823	-		RR42_RS32265	0.82	+2.6
2,627,848	+		RR42_RS32265	0.85	-0.5
2,627,848	+		RR42_RS32265	0.85	+0.0
2,627,848	+		RR42_RS32265	0.85	-1.1
2,627,848	+		RR42_RS32265	0.85	-0.4
2,627,849	-		RR42_RS32265	0.85	+2.4
2,627,849	-		RR42_RS32265	0.85	+3.3
2,627,849	-		RR42_RS32265	0.85	+2.7
2,627,900	+				-1.0
2,627,977	+				-1.3
2,627,977	+				-0.6
2,627,978	-				+0.7
2,627,978	-				+0.9
2,628,021	-				+0.9
2,628,021	-				+0.9
2,628,021	-				+1.9