Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32250

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,622,875	+		RR42_RS32245	0.79	-1.5
2,622,876	-		RR42_RS32245	0.79	-3.4
2,622,876	-		RR42_RS32245	0.79	-3.3
2,622,876	-		RR42_RS32245	0.79	-2.1
2,623,173	+				-0.5
2,623,173	+				-3.5
2,623,173	+				-3.6
2,623,173	+				-2.1
2,623,174	-				-1.4
2,623,174	-				-0.7
2,623,174	-				-2.2
2,623,174	-				-2.5
2,623,174	-				-3.8
2,623,174	-				-2.3
2,623,174	-				-1.7
2,623,174	-				-0.3
2,623,176	+				-2.3
2,623,176	+				-2.8
2,623,176	+				+0.3
2,623,177	-				-2.8
2,623,177	-				-1.7
2,623,177	-				-3.0
2,623,177	-				-1.7
2,623,177	-				-2.0
2,623,177	-				-1.2
2,623,237	+				-4.0
2,623,238	-				+0.9
2,623,361	-				-2.1
2,623,444	+				+1.5
2,623,444	+				+0.3
2,623,445	-				-2.2
2,623,445	-				-0.5
2,623,445	-				-1.8
2,623,445	-				-3.2
2,623,616	+		RR42_RS32250	0.15	-2.0
2,623,616	+		RR42_RS32250	0.15	-3.8
2,623,617	-		RR42_RS32250	0.15	-3.1
2,623,617	-		RR42_RS32250	0.15	-5.3
2,623,692	-		RR42_RS32250	0.25	-2.3
2,623,718	-		RR42_RS32250	0.28	-2.8
2,623,718	-		RR42_RS32250	0.28	-3.3
2,623,898	+		RR42_RS32250	0.50	-3.8
2,623,952	+		RR42_RS32250	0.57	-3.7
2,623,952	+		RR42_RS32250	0.57	-2.1
2,623,952	+		RR42_RS32250	0.57	+0.9
2,623,952	+		RR42_RS32250	0.57	-4.1
2,623,952	+		RR42_RS32250	0.57	-2.5
2,623,952	+		RR42_RS32250	0.57	-4.1
2,623,953	-		RR42_RS32250	0.57	-3.2
2,623,953	-		RR42_RS32250	0.57	-5.0
2,623,953	-		RR42_RS32250	0.57	-0.7
2,624,090	-		RR42_RS32250	0.74	-2.3
2,624,090	-		RR42_RS32250	0.74	-2.2
2,624,090	-		RR42_RS32250	0.74	-4.0
2,624,090	-		RR42_RS32250	0.74	-3.2
2,624,090	-		RR42_RS32250	0.74	-4.4
2,624,093	+		RR42_RS32250	0.75	-2.6
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,093	+		RR42_RS32250	0.75	-4.4
2,624,093	+		RR42_RS32250	0.75	-4.5
2,624,093	+		RR42_RS32250	0.75	-4.1
2,624,093	+		RR42_RS32250	0.75	-3.8
2,624,094	-		RR42_RS32250	0.75	-4.9
2,624,114	+		RR42_RS32250	0.77	-3.1
2,624,115	-		RR42_RS32250	0.77	-4.7
2,624,132	+		RR42_RS32250	0.79	-3.3
2,624,132	+		RR42_RS32250	0.79	-3.5
2,624,133	-		RR42_RS32250	0.80	-2.1
2,625,121	+				+0.9
2,625,199	+				-0.7
2,625,200	-				-0.8
2,625,200	-				-1.4