Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32170

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,604,022	+		RR42_RS32165	0.36	+0.6
2,604,022	+		RR42_RS32165	0.36	+0.4
2,604,023	-		RR42_RS32165	0.36	+1.6
2,604,023	-		RR42_RS32165	0.36	-0.5
2,604,043	+		RR42_RS32165	0.37	-0.6
2,604,047	+		RR42_RS32165	0.37	-0.1
2,604,048	-		RR42_RS32165	0.38	+0.5
2,604,199	+		RR42_RS32165	0.49	-2.6
2,604,592	+		RR42_RS32165	0.79	-0.6
2,604,936	-				+0.6
2,604,951	+				+1.8
2,604,957	-				+1.8
2,605,110	+		RR42_RS32170	0.16	-2.6
2,605,254	+		RR42_RS32170	0.39	+0.4
2,605,254	+		RR42_RS32170	0.39	+0.2
2,605,254	+		RR42_RS32170	0.39	+1.8
2,605,254	+		RR42_RS32170	0.39	-1.3
2,605,255	-		RR42_RS32170	0.39	-1.1
2,605,255	-		RR42_RS32170	0.39	-3.2
2,605,573	-		RR42_RS32170	0.90	-0.8
2,605,859	+				-0.2
2,605,859	+				+0.7
2,605,860	-				-0.7
2,605,897	-				-2.2
2,606,016	+		RR42_RS32175	0.11	+0.2
2,606,016	+		RR42_RS32175	0.11	-0.1
2,606,017	-		RR42_RS32175	0.11	+1.9
2,606,017	-		RR42_RS32175	0.11	-0.9
2,606,061	+		RR42_RS32175	0.15	-0.0
2,606,062	-		RR42_RS32175	0.15	-1.1
2,606,062	-		RR42_RS32175	0.15	-1.3
2,606,062	-		RR42_RS32175	0.15	+1.2
2,606,062	-		RR42_RS32175	0.15	-0.3
2,606,101	-		RR42_RS32175	0.19	-1.2
2,606,256	+		RR42_RS32175	0.33	+1.2
2,606,451	+		RR42_RS32175	0.51	-0.0
2,606,452	-		RR42_RS32175	0.51	+1.3
2,606,452	-		RR42_RS32175	0.51	-2.0
2,606,452	-		RR42_RS32175	0.51	+0.1
2,606,575	-		RR42_RS32175	0.63	+1.0
2,606,575	-		RR42_RS32175	0.63	-2.8
2,606,592	+		RR42_RS32175	0.64	-1.1
2,606,593	-		RR42_RS32175	0.64	-0.4