Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32070

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,570,759	-				-0.4
2,570,789	-				+0.3
2,570,800	+				-0.0
2,570,800	+				+0.1
2,570,801	-				-0.8
2,570,837	+				-1.2
2,570,974	+		RR42_RS32065	0.24	-0.8
2,570,974	+		RR42_RS32065	0.24	-0.4
2,570,974	+		RR42_RS32065	0.24	+1.2
2,570,974	+		RR42_RS32065	0.24	-0.0
2,570,975	-		RR42_RS32065	0.24	+0.4
2,570,975	-		RR42_RS32065	0.24	-0.4
2,570,975	-		RR42_RS32065	0.24	+1.8
2,570,975	-		RR42_RS32065	0.24	-0.7
2,571,001	+		RR42_RS32065	0.28	-0.2
2,571,002	-		RR42_RS32065	0.28	-0.2
2,571,029	+		RR42_RS32065	0.32	+0.6
2,571,030	-		RR42_RS32065	0.32	-0.6
2,571,030	-		RR42_RS32065	0.32	-1.5
2,571,030	-		RR42_RS32065	0.32	-0.4
2,571,030	-		RR42_RS32065	0.32	+0.6
2,571,030	-		RR42_RS32065	0.32	-2.9
2,571,187	+		RR42_RS32065	0.53	-0.4
2,571,187	+		RR42_RS32065	0.53	-0.4
2,571,449	-		RR42_RS32065	0.90	-2.5
2,571,469	+				+0.3
2,571,527	+				+1.0
2,571,528	-				+0.6
2,571,528	-				-1.8
2,571,582	+				-0.1
2,571,582	+				+0.3
2,571,582	+				-1.2
2,571,582	+				-0.5
2,571,582	+				+1.8
2,571,582	+				-0.1
2,571,582	+				-1.1
2,571,582	+				+0.0
2,571,582	+				-1.3
2,571,582	+				+0.8
2,571,582	+				-0.8
2,571,583	-				+2.0
2,571,583	-				-1.0
2,571,583	-				+0.2
2,571,583	-				+0.3
2,571,583	-				-0.8
2,571,583	-				+0.9
2,571,583	-				-0.4
2,571,583	-				-0.0
2,571,583	-				-0.2
2,571,583	-				+0.8
2,571,583	-				-0.3
2,571,583	-				-2.0
2,571,583	-				+0.0
2,571,583	-				-1.2
2,571,583	-				-1.2
2,571,583	-				-0.3
2,571,583	-				-0.7
2,571,583	-				+0.3
2,571,583	-				-0.6
2,571,583	-				-0.2
2,571,583	-				+1.3
2,571,739	-		RR42_RS32070	0.13	-0.2
2,571,972	+		RR42_RS32070	0.37	-2.8
2,571,972	+		RR42_RS32070	0.37	-0.1
2,572,483	-				+0.7
2,572,483	-				+0.4
2,572,506	+				+0.2
2,572,568	+				+0.3
2,572,591	-				+0.7
2,572,601	+				-0.5
2,572,601	+				+0.4
2,572,613	-				+0.3
2,572,700	+				-0.2
2,572,700	+				-1.5
2,572,700	+				-0.0
2,572,701	-				+2.0
2,572,701	-				-0.2
2,572,718	+				+0.4
2,572,719	-				+0.8
2,572,719	-				-0.0
2,572,959	+		RR42_RS32075	0.24	-0.1
2,573,027	+		RR42_RS32075	0.29	-0.8
2,573,027	+		RR42_RS32075	0.29	-1.2
2,573,027	+		RR42_RS32075	0.29	+0.6
2,573,243	+		RR42_RS32075	0.44	+1.4
2,573,244	-		RR42_RS32075	0.44	-1.1
2,573,244	-		RR42_RS32075	0.44	+0.7
2,573,305	+		RR42_RS32075	0.48	-2.2
2,573,305	+		RR42_RS32075	0.48	-0.1
2,573,306	-		RR42_RS32075	0.48	-2.8
2,573,306	-		RR42_RS32075	0.48	-0.3
2,573,479	+		RR42_RS32075	0.60	-1.8
2,573,479	+		RR42_RS32075	0.60	-0.1