Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32055

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,568,084	+		RR42_RS32050	0.55	+0.7
2,568,589	-				-0.6
2,568,589	-				-0.1
2,568,589	-				+1.2
2,568,660	+				-0.8
2,568,661	-				+0.4
2,568,661	-				+0.1
2,568,665	+				+0.6
2,568,804	-				+0.5
2,568,804	-				+0.5
2,569,128	+		RR42_RS32055	0.28	+0.0
2,569,129	-		RR42_RS32055	0.28	-1.5
2,569,397	-		RR42_RS32055	0.48	-0.7
2,569,407	+		RR42_RS32055	0.49	-0.5
2,569,408	-		RR42_RS32055	0.49	+0.8
2,569,408	-		RR42_RS32055	0.49	-2.3
2,570,377	+		RR42_RS32060	0.28	-0.6
2,570,377	+		RR42_RS32060	0.28	+0.9
2,570,377	+		RR42_RS32060	0.28	-0.1
2,570,377	+		RR42_RS32060	0.28	-0.2
2,570,377	+		RR42_RS32060	0.28	-0.3
2,570,378	-		RR42_RS32060	0.28	+0.1
2,570,380	-		RR42_RS32060	0.28	+0.8
2,570,380	-		RR42_RS32060	0.28	+0.1
2,570,415	-		RR42_RS32060	0.34	-1.2
2,570,415	-		RR42_RS32060	0.34	+0.5
2,570,432	+		RR42_RS32060	0.37	-0.4
2,570,432	+		RR42_RS32060	0.37	-0.3
2,570,432	+		RR42_RS32060	0.37	-0.1
2,570,759	-				-0.4
2,570,789	-				+0.3
2,570,800	+				-0.0
2,570,800	+				+0.1
2,570,801	-				-0.8
2,570,837	+				-1.2
2,570,974	+		RR42_RS32065	0.24	-0.8
2,570,974	+		RR42_RS32065	0.24	-0.4
2,570,974	+		RR42_RS32065	0.24	+1.2
2,570,974	+		RR42_RS32065	0.24	-0.0
2,570,975	-		RR42_RS32065	0.24	+0.4
2,570,975	-		RR42_RS32065	0.24	-0.4
2,570,975	-		RR42_RS32065	0.24	+1.8
2,570,975	-		RR42_RS32065	0.24	-0.7
2,571,001	+		RR42_RS32065	0.28	-0.2
2,571,002	-		RR42_RS32065	0.28	-0.2
2,571,029	+		RR42_RS32065	0.32	+0.6
2,571,030	-		RR42_RS32065	0.32	-0.6
2,571,030	-		RR42_RS32065	0.32	-1.5
2,571,030	-		RR42_RS32065	0.32	-0.4
2,571,030	-		RR42_RS32065	0.32	+0.6
2,571,030	-		RR42_RS32065	0.32	-2.9