Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31640

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,476,191	+		RR42_RS31635	0.58	+1.2
2,476,191	+		RR42_RS31635	0.58	-1.8
2,476,244	+		RR42_RS31635	0.63	+1.9
2,476,246	-		RR42_RS31635	0.63	-1.1
2,476,285	-		RR42_RS31635	0.67	+0.4
2,476,329	+		RR42_RS31635	0.71	+0.2
2,476,427	+		RR42_RS31635	0.81	+0.7
2,476,519	-		RR42_RS31635	0.90	+0.7
2,476,582	-				-0.4
2,476,666	+				-0.1
2,476,902	+				-1.7
2,477,072	+				-1.4
2,477,072	+				+0.5
2,477,084	+				+0.4
2,477,084	+				+0.1
2,477,210	+				-0.0
2,477,210	+				-1.4
2,477,210	+				-2.1
2,477,327	-		RR42_RS31640	0.11	+0.3
2,477,502	+		RR42_RS31640	0.19	+0.6
2,477,654	+		RR42_RS31640	0.26	-0.8
2,477,655	-		RR42_RS31640	0.26	+1.8
2,477,757	-		RR42_RS31640	0.31	-1.3
2,477,796	+		RR42_RS31640	0.32	-0.6
2,477,826	-		RR42_RS31640	0.34	-2.1
2,477,856	-		RR42_RS31640	0.35	+1.0
2,477,910	+		RR42_RS31640	0.37	-0.6
2,477,911	-		RR42_RS31640	0.37	-0.8
2,477,911	-		RR42_RS31640	0.37	-0.6
2,478,182	+		RR42_RS31640	0.49	-0.6
2,478,385	+		RR42_RS31640	0.58	+0.3
2,478,385	+		RR42_RS31640	0.58	-0.2
2,478,385	+		RR42_RS31640	0.58	+0.2
2,478,386	-		RR42_RS31640	0.59	+0.2
2,478,732	-		RR42_RS31640	0.74	+0.6
2,478,732	-		RR42_RS31640	0.74	-0.8
2,478,871	-		RR42_RS31640	0.80	-1.4
2,479,211	+				+0.5
2,479,277	-				-0.7
2,479,414	-				-0.2
2,479,414	-				+0.4
2,479,414	-				-1.4
2,479,564	-				+0.5
2,479,895	-		RR42_RS31645	0.46	-1.0
2,480,063	-		RR42_RS31645	0.74	+0.9
2,480,063	-		RR42_RS31645	0.74	-0.1
2,480,063	-		RR42_RS31645	0.74	+1.1