Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31615

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,471,221	+		RR42_RS31610	0.29	-0.7
2,471,335	+		RR42_RS31610	0.38	+0.5
2,471,336	-		RR42_RS31610	0.38	-0.3
2,471,336	-		RR42_RS31610	0.38	+0.3
2,471,455	+		RR42_RS31610	0.48	+0.0
2,471,455	+		RR42_RS31610	0.48	+0.3
2,471,455	+		RR42_RS31610	0.48	-1.6
2,471,456	-		RR42_RS31610	0.48	+0.8
2,471,479	-		RR42_RS31610	0.50	+0.3
2,471,481	-		RR42_RS31610	0.50	-0.4
2,471,481	-		RR42_RS31610	0.50	-2.3
2,471,528	+		RR42_RS31610	0.54	+0.7
2,471,599	+		RR42_RS31610	0.60	+0.3
2,471,600	-		RR42_RS31610	0.60	-0.8
2,471,600	-		RR42_RS31610	0.60	+0.7
2,471,605	-		RR42_RS31610	0.60	-2.4
2,471,627	-		RR42_RS31610	0.62	-2.2
2,471,686	+		RR42_RS31610	0.67	+0.5
2,471,686	+		RR42_RS31610	0.67	+0.0
2,471,686	+		RR42_RS31610	0.67	-0.8
2,471,687	-		RR42_RS31610	0.67	+1.6
2,471,737	-		RR42_RS31610	0.71	+0.6
2,471,911	+		RR42_RS31610	0.86	+1.5
2,472,287	+		RR42_RS31615	0.20	-1.4
2,472,288	-		RR42_RS31615	0.20	+0.2
2,472,288	-		RR42_RS31615	0.20	-0.8
2,472,771	+		RR42_RS31615	0.76	-1.1
2,472,958	-				+0.7
2,472,976	-				-0.2
2,473,084	+		RR42_RS31620	0.18	-1.5
2,473,085	-		RR42_RS31620	0.18	-1.3
2,473,168	-		RR42_RS31620	0.30	+0.2
2,473,416	+		RR42_RS31620	0.67	-0.1
2,473,417	-		RR42_RS31620	0.67	-0.8
2,473,428	+		RR42_RS31620	0.68	+1.2
2,473,428	+		RR42_RS31620	0.68	-1.2
2,473,428	+		RR42_RS31620	0.68	-0.9
2,473,429	-		RR42_RS31620	0.69	-0.2
2,473,470	+		RR42_RS31620	0.75	+1.3
2,473,471	-		RR42_RS31620	0.75	-0.3
2,473,471	-		RR42_RS31620	0.75	-0.0
2,473,471	-		RR42_RS31620	0.75	-1.2
2,473,798	-				-1.3
2,473,922	-		RR42_RS31625	0.20	+0.3
2,473,922	-		RR42_RS31625	0.20	+0.3