Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31200

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,375,780	+		RR42_RS31190	0.37	-2.0
2,375,780	+		RR42_RS31190	0.37	+1.0
2,375,780	+		RR42_RS31190	0.37	+0.6
2,375,780	+		RR42_RS31190	0.37	+0.5
2,375,780	+		RR42_RS31190	0.37	+1.4
2,375,781	-		RR42_RS31190	0.37	+1.8
2,375,781	-		RR42_RS31190	0.37	+0.7
2,375,781	-		RR42_RS31190	0.37	+1.7
2,375,781	-		RR42_RS31190	0.37	-1.0
2,375,891	+		RR42_RS31190	0.52	-0.3
2,375,892	-		RR42_RS31190	0.52	+0.3
2,375,994	-		RR42_RS31190	0.66	-1.1
2,375,997	-		RR42_RS31190	0.67	-0.9
2,376,159	-		RR42_RS31190	0.89	+0.4
2,376,384	+		RR42_RS31195	0.31	-0.6
2,376,384	+		RR42_RS31195	0.31	-0.2
2,376,385	-		RR42_RS31195	0.31	+0.7
2,376,385	-		RR42_RS31195	0.31	-0.0
2,376,431	-		RR42_RS31195	0.41	-0.4
2,376,523	+		RR42_RS31195	0.61	-0.8
2,376,523	+		RR42_RS31195	0.61	+0.8
2,376,524	-		RR42_RS31195	0.61	-0.9
2,376,524	-		RR42_RS31195	0.61	-0.4
2,376,725	+				-1.6
2,376,726	-				-0.8
2,376,726	-				+0.0
2,377,056	+		RR42_RS31200	0.29	-1.1
2,377,057	-		RR42_RS31200	0.29	+0.6
2,377,437	+		RR42_RS31200	0.62	-0.2
2,377,438	-		RR42_RS31200	0.62	+1.0
2,377,582	+		RR42_RS31200	0.74	+0.0
2,377,671	+		RR42_RS31200	0.81	+1.2
2,377,773	+				+0.7
2,377,774	-				+0.5
2,377,879	+				+1.1
2,377,941	-				-0.1
2,378,121	+		RR42_RS31205	0.38	+0.3
2,378,122	-		RR42_RS31205	0.38	-0.9
2,378,300	+		RR42_RS31205	0.68	+1.0
2,378,300	+		RR42_RS31205	0.68	+1.3
2,378,301	-		RR42_RS31205	0.68	-3.2
2,378,301	-		RR42_RS31205	0.68	-0.3
2,378,614	+				+0.3
2,378,614	+				+0.5
2,378,615	-				-0.4