Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31185

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,373,682	+				-0.1
2,373,683	-				-0.3
2,373,743	+				+0.3
2,373,764	+				-0.1
2,373,764	+				+0.7
2,373,764	+				+1.1
2,373,765	-				+0.5
2,373,765	-				+0.2
2,373,765	-				+0.9
2,373,816	-		RR42_RS31180	0.16	-1.9
2,373,848	+		RR42_RS31180	0.23	+0.1
2,373,848	+		RR42_RS31180	0.23	+0.9
2,373,848	+		RR42_RS31180	0.23	-0.2
2,373,849	-		RR42_RS31180	0.24	+1.0
2,373,849	-		RR42_RS31180	0.24	+0.7
2,373,849	-		RR42_RS31180	0.24	-1.7
2,373,851	+		RR42_RS31180	0.24	+0.9
2,373,852	-		RR42_RS31180	0.24	-1.1
2,373,852	-		RR42_RS31180	0.24	-0.8
2,373,852	-		RR42_RS31180	0.24	+1.1
2,374,109	+		RR42_RS31180	0.81	+2.1
2,374,109	+		RR42_RS31180	0.81	+0.4
2,374,109	+		RR42_RS31180	0.81	+0.5
2,374,110	-		RR42_RS31180	0.81	+1.0
2,374,110	-		RR42_RS31180	0.81	+0.1
2,374,247	-				-0.2
2,374,274	-				+0.8
2,374,389	+				+1.0
2,374,390	-				+1.6
2,374,507	+		RR42_RS31185	0.18	+2.2
2,374,507	+		RR42_RS31185	0.18	+2.7
2,374,507	+		RR42_RS31185	0.18	+1.5
2,374,508	-		RR42_RS31185	0.18	+1.4
2,374,508	-		RR42_RS31185	0.18	+1.7
2,374,508	-		RR42_RS31185	0.18	+1.3
2,374,508	-		RR42_RS31185	0.18	+1.8
2,374,516	+		RR42_RS31185	0.19	+1.2
2,374,517	-		RR42_RS31185	0.19	+1.3
2,374,518	+		RR42_RS31185	0.19	+1.6
2,374,518	+		RR42_RS31185	0.19	+2.1
2,374,518	+		RR42_RS31185	0.19	+2.1
2,374,518	+		RR42_RS31185	0.19	+2.6
2,374,519	-		RR42_RS31185	0.19	+1.6
2,374,519	-		RR42_RS31185	0.19	+3.4
2,374,519	-		RR42_RS31185	0.19	+1.9
2,374,519	-		RR42_RS31185	0.19	+0.1
2,374,519	-		RR42_RS31185	0.19	+1.9
2,374,519	-		RR42_RS31185	0.19	+1.2
2,374,519	-		RR42_RS31185	0.19	+1.1
2,374,623	+		RR42_RS31185	0.27	+2.4
2,374,623	+		RR42_RS31185	0.27	+2.2
2,374,989	+		RR42_RS31185	0.57	+1.5
2,374,989	+		RR42_RS31185	0.57	+2.5
2,375,035	+		RR42_RS31185	0.61	+2.0
2,375,035	+		RR42_RS31185	0.61	+2.1
2,375,053	+		RR42_RS31185	0.63	+1.8
2,375,109	+		RR42_RS31185	0.67	+2.1
2,375,109	+		RR42_RS31185	0.67	+0.9
2,375,110	-		RR42_RS31185	0.67	+2.8
2,375,144	+		RR42_RS31185	0.70	+2.4
2,375,144	+		RR42_RS31185	0.70	+1.9
2,375,144	+		RR42_RS31185	0.70	+2.5
2,375,144	+		RR42_RS31185	0.70	+1.9
2,375,144	+		RR42_RS31185	0.70	+2.4
2,375,145	-		RR42_RS31185	0.70	+0.7
2,375,199	+		RR42_RS31185	0.74	+2.3
2,375,200	-		RR42_RS31185	0.74	+2.5
2,375,328	+		RR42_RS31185	0.85	+1.4
2,375,328	+		RR42_RS31185	0.85	+2.0
2,375,329	-		RR42_RS31185	0.85	+1.6
2,375,329	-		RR42_RS31185	0.85	+2.3
2,375,553	+				+0.4
2,375,553	+				+1.7
2,375,554	-				-1.0
2,375,555	+				-0.3
2,375,556	-				-0.1
2,375,780	+		RR42_RS31190	0.37	-2.0
2,375,780	+		RR42_RS31190	0.37	+1.0
2,375,780	+		RR42_RS31190	0.37	+0.6
2,375,780	+		RR42_RS31190	0.37	+0.5
2,375,780	+		RR42_RS31190	0.37	+1.4
2,375,781	-		RR42_RS31190	0.37	+1.8
2,375,781	-		RR42_RS31190	0.37	+0.7
2,375,781	-		RR42_RS31190	0.37	+1.7
2,375,781	-		RR42_RS31190	0.37	-1.0
2,375,891	+		RR42_RS31190	0.52	-0.3
2,375,892	-		RR42_RS31190	0.52	+0.3
2,375,994	-		RR42_RS31190	0.66	-1.1
2,375,997	-		RR42_RS31190	0.67	-0.9
2,376,159	-		RR42_RS31190	0.89	+0.4
2,376,384	+		RR42_RS31195	0.31	-0.6
2,376,384	+		RR42_RS31195	0.31	-0.2
2,376,385	-		RR42_RS31195	0.31	+0.7
2,376,385	-		RR42_RS31195	0.31	-0.0
2,376,431	-		RR42_RS31195	0.41	-0.4