Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30660

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,252,108	+				-0.4
2,252,108	+				+0.4
2,252,109	-				-0.4
2,252,109	-				+0.3
2,252,145	-		RR42_RS30655	0.13	+0.3
2,252,192	+		RR42_RS30655	0.18	+0.1
2,252,193	-		RR42_RS30655	0.18	-0.5
2,252,207	+		RR42_RS30655	0.20	-1.4
2,252,207	+		RR42_RS30655	0.20	+0.5
2,252,208	-		RR42_RS30655	0.20	+0.2
2,252,208	-		RR42_RS30655	0.20	-0.3
2,252,646	+		RR42_RS30655	0.67	-1.9
2,252,647	-		RR42_RS30655	0.67	-0.7
2,252,974	+				-0.7
2,252,975	-				-1.0
2,253,082	+				+2.1
2,253,110	-				+1.4
2,253,290	+				-1.2
2,253,291	-				-1.9
2,253,291	-				+1.8
2,253,291	-				-1.2
2,253,377	+		RR42_RS30660	0.12	-0.6
2,253,446	+		RR42_RS30660	0.15	-0.3
2,253,578	+		RR42_RS30660	0.20	-0.5
2,253,578	+		RR42_RS30660	0.20	-1.5
2,253,650	+		RR42_RS30660	0.23	-0.7
2,253,650	+		RR42_RS30660	0.23	-1.1
2,253,651	-		RR42_RS30660	0.23	-0.9
2,253,752	+		RR42_RS30660	0.28	-0.3
2,253,764	+		RR42_RS30660	0.28	+1.0
2,253,805	+		RR42_RS30660	0.30	-0.1
2,253,809	+		RR42_RS30660	0.30	+0.0
2,253,809	+		RR42_RS30660	0.30	-0.2
2,254,574	+		RR42_RS30660	0.62	+1.5
2,254,599	-		RR42_RS30660	0.63	+0.1
2,254,631	+		RR42_RS30660	0.64	+1.3
2,254,631	+		RR42_RS30660	0.64	-3.3
2,254,676	+		RR42_RS30660	0.66	-0.9
2,254,713	-		RR42_RS30660	0.68	-1.7
2,255,027	+		RR42_RS30660	0.81	-0.6
2,255,168	+		RR42_RS30660	0.87	-0.0
2,255,467	+				-0.1
2,255,483	+				-2.2
2,255,522	+				+0.8
2,255,523	-				+1.0
2,255,523	-				+0.2
2,255,535	-				-1.3
2,255,697	+				+0.3
2,255,720	-				+0.3
2,255,720	-				+1.1
2,256,007	-		RR42_RS30665	0.12	-0.6
2,256,018	+		RR42_RS30665	0.12	+1.6
2,256,019	-		RR42_RS30665	0.12	+0.8
2,256,019	-		RR42_RS30665	0.12	+0.2
2,256,019	-		RR42_RS30665	0.12	+1.1
2,256,063	+		RR42_RS30665	0.14	+1.5
2,256,063	+		RR42_RS30665	0.14	-0.2
2,256,063	+		RR42_RS30665	0.14	-0.7
2,256,063	+		RR42_RS30665	0.14	-0.3
2,256,063	+		RR42_RS30665	0.14	+0.1
2,256,064	-		RR42_RS30665	0.14	+0.7
2,256,064	-		RR42_RS30665	0.14	-0.1
2,256,079	-		RR42_RS30665	0.15	-0.2
2,256,130	-		RR42_RS30665	0.17	+0.9
2,256,130	-		RR42_RS30665	0.17	+1.1
2,256,198	+		RR42_RS30665	0.21	+1.1
2,256,201	+		RR42_RS30665	0.21	-1.7
2,256,202	-		RR42_RS30665	0.21	+1.0
2,256,474	+		RR42_RS30665	0.34	+0.1