Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30615

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,245,610	+		RR42_RS30610	0.24	-0.6
2,245,652	+		RR42_RS30610	0.27	+0.7
2,245,653	-		RR42_RS30610	0.27	+0.2
2,245,715	+		RR42_RS30610	0.33	-0.5
2,245,715	+		RR42_RS30610	0.33	-0.9
2,245,716	-		RR42_RS30610	0.33	-0.1
2,245,772	+		RR42_RS30610	0.37	+1.2
2,245,772	+		RR42_RS30610	0.37	-2.9
2,245,773	-		RR42_RS30610	0.37	-0.5
2,245,773	-		RR42_RS30610	0.37	-0.5
2,245,799	+		RR42_RS30610	0.39	-0.9
2,245,892	+		RR42_RS30610	0.47	-0.5
2,245,892	+		RR42_RS30610	0.47	-1.2
2,245,892	+		RR42_RS30610	0.47	+1.0
2,245,893	-		RR42_RS30610	0.47	+0.5
2,245,893	-		RR42_RS30610	0.47	+0.0
2,245,918	+		RR42_RS30610	0.49	+0.3
2,245,918	+		RR42_RS30610	0.49	+0.8
2,245,918	+		RR42_RS30610	0.49	+0.4
2,245,919	-		RR42_RS30610	0.49	+0.5
2,245,943	+		RR42_RS30610	0.51	+1.0
2,245,944	+		RR42_RS30610	0.51	+0.4
2,245,944	-		RR42_RS30610	0.51	+0.3
2,245,944	-		RR42_RS30610	0.51	+1.2
2,245,944	-		RR42_RS30610	0.51	-0.0
2,245,944	-		RR42_RS30610	0.51	-0.6
2,245,984	+		RR42_RS30610	0.55	-0.3
2,246,060	+		RR42_RS30610	0.61	-0.0
2,246,061	-		RR42_RS30610	0.61	+0.1
2,246,061	-		RR42_RS30610	0.61	-1.2
2,246,061	-		RR42_RS30610	0.61	-1.3
2,246,290	+		RR42_RS30610	0.80	+0.2
2,246,554	+				+0.3
2,246,555	-				-0.2
2,246,555	-				+0.2
2,246,582	+				+0.7
2,246,583	-				+0.9
2,246,843	+				+0.6
2,246,843	+				-1.0
2,246,843	+				+1.2
2,246,850	+				+0.3
2,246,851	-				+1.7
2,246,900	+		RR42_RS30620	0.15	-0.7
2,246,900	+		RR42_RS30620	0.15	+0.1
2,246,900	+		RR42_RS30620	0.15	-0.2
2,246,900	+		RR42_RS30620	0.15	+0.3
2,246,900	+		RR42_RS30620	0.15	+0.1
2,246,900	+		RR42_RS30620	0.15	-0.5
2,246,901	-		RR42_RS30620	0.15	-0.6
2,246,932	+		RR42_RS30620	0.23	-0.2
2,246,933	-		RR42_RS30620	0.23	-0.3
2,246,966	+		RR42_RS30620	0.31	-0.4
2,246,967	-		RR42_RS30620	0.31	+1.8
2,246,967	-		RR42_RS30620	0.31	+0.0
2,246,967	-		RR42_RS30620	0.31	-2.1
2,246,967	-		RR42_RS30620	0.31	+0.2
2,246,968	+		RR42_RS30620	0.31	+0.9
2,246,968	+		RR42_RS30620	0.31	-0.9
2,247,059	+		RR42_RS30620	0.53	+0.2
2,247,059	+		RR42_RS30620	0.53	+1.0
2,247,059	+		RR42_RS30620	0.53	+1.1
2,247,060	-		RR42_RS30620	0.53	+1.1
2,247,060	-		RR42_RS30620	0.53	+0.4
2,247,060	-		RR42_RS30620	0.53	-0.8
2,247,079	-		RR42_RS30620	0.58	+1.2
2,247,079	-		RR42_RS30620	0.58	+0.2
2,247,091	+		RR42_RS30620	0.61	+0.8
2,247,092	-		RR42_RS30620	0.61	+1.7
2,247,162	+		RR42_RS30620	0.78	+0.2
2,247,162	+		RR42_RS30620	0.78	+0.1
2,247,162	+		RR42_RS30620	0.78	-1.2
2,247,162	+		RR42_RS30620	0.78	+0.7
2,247,163	-		RR42_RS30620	0.78	+0.7
2,247,163	-		RR42_RS30620	0.78	+1.7
2,247,163	-		RR42_RS30620	0.78	+0.1
2,247,222	-				-0.4
2,247,222	-				-1.0
2,247,287	+				-0.5
2,247,345	+				-0.7
2,247,345	+				+0.4
2,247,345	+				+1.5
2,247,345	+				-0.2
2,247,345	+				-0.9
2,247,345	+				+1.2
2,247,345	+				+0.8
2,247,345	+				+0.4
2,247,346	-				+0.5
2,247,346	-				+0.7
2,247,346	-				+0.3
2,247,346	-				+1.4
2,247,346	-				+0.9
2,247,346	-				+1.2
2,247,346	-				+0.2
2,247,346	-				-0.8
2,247,440	+				+0.4
2,247,440	+				-2.2
2,247,441	-				-0.3
2,247,441	-				+0.3
2,247,441	-				+1.0
2,247,574	+		RR42_RS30625	0.28	+0.9