Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29980

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,092,525	-				-0.3
2,092,600	-				-0.6
2,092,729	-				-0.6
2,092,743	+				+0.7
2,092,743	+				+0.8
2,092,744	-				-0.3
2,092,744	-				-0.1
2,092,843	-				-0.6
2,092,982	+				+1.7
2,092,982	+				-1.0
2,093,013	-				-0.9
2,093,241	-				+0.8
2,093,259	-				+0.3
2,093,259	-				+0.9
2,093,320	-				+0.4
2,093,346	+				-0.3
2,093,346	+				+0.7
2,093,353	-				+1.0
2,093,365	-				-0.2
2,093,398	+				+0.5
2,093,398	+				-0.3
2,093,398	+				-1.2
2,093,410	-				-0.4
2,093,612	+		RR42_RS29980	0.36	+0.6
2,093,612	+		RR42_RS29980	0.36	-1.9
2,093,613	-		RR42_RS29980	0.36	-0.7
2,093,615	+		RR42_RS29980	0.36	+0.2
2,093,690	+		RR42_RS29980	0.57	-1.9
2,093,727	-		RR42_RS29980	0.67	-0.5
2,093,727	-		RR42_RS29980	0.67	+1.4
2,094,001	-		RR42_RS29985	0.31	+0.9
2,094,002	+		RR42_RS29985	0.32	+0.2
2,094,002	+		RR42_RS29985	0.32	+0.6
2,094,002	+		RR42_RS29985	0.32	+1.2
2,094,002	+		RR42_RS29985	0.32	+0.2
2,094,003	-		RR42_RS29985	0.32	-2.1
2,094,003	-		RR42_RS29985	0.32	-0.1
2,094,101	-		RR42_RS29985	0.52	+2.5
2,094,112	+		RR42_RS29985	0.54	-0.3
2,094,113	-		RR42_RS29985	0.54	+0.7
2,094,130	-		RR42_RS29985	0.58	-0.5
2,094,130	-		RR42_RS29985	0.58	-1.1
2,094,251	+		RR42_RS29985	0.83	+1.2
2,094,251	+		RR42_RS29985	0.83	+0.8
2,094,336	+				-0.7
2,094,336	+				+0.2
2,094,336	+				+0.5
2,094,337	-				-2.1
2,094,337	-				-0.1
2,094,337	-				-0.9
2,094,337	-				+0.2
2,094,345	+				+0.4
2,094,346	-				+0.4
2,094,347	+				-0.3
2,094,376	+				-1.5
2,094,377	-				-0.3
2,094,430	+				-0.9
2,094,431	-				-0.3
2,094,512	+				+0.0
2,094,512	+				+0.8
2,094,513	-				+1.7
2,094,513	-				-0.3
2,094,550	-				+0.5
2,094,589	+				+0.3
2,094,589	+				-1.1
2,094,826	-				+1.9