Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29885

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,068,847	-		RR42_RS29880	0.11	+0.7
2,068,929	+		RR42_RS29880	0.19	+0.3
2,068,929	+		RR42_RS29880	0.19	-0.7
2,068,930	-		RR42_RS29880	0.19	-0.7
2,068,930	-		RR42_RS29880	0.19	-0.6
2,068,930	-		RR42_RS29880	0.19	-0.6
2,068,930	-		RR42_RS29880	0.19	+0.7
2,068,930	-		RR42_RS29880	0.19	-0.6
2,068,930	-		RR42_RS29880	0.19	+0.9
2,068,930	-		RR42_RS29880	0.19	+0.1
2,068,931	+		RR42_RS29880	0.19	+0.3
2,068,932	-		RR42_RS29880	0.19	+2.1
2,068,932	-		RR42_RS29880	0.19	+0.5
2,068,960	+		RR42_RS29880	0.21	+0.4
2,068,961	-		RR42_RS29880	0.22	+0.1
2,069,226	-		RR42_RS29880	0.46	+1.2
2,069,226	-		RR42_RS29880	0.46	-1.0
2,069,317	+		RR42_RS29880	0.55	-0.3
2,069,317	+		RR42_RS29880	0.55	+0.1
2,069,318	-		RR42_RS29880	0.55	-0.5
2,069,327	+		RR42_RS29880	0.56	-0.6
2,069,327	+		RR42_RS29880	0.56	+1.7
2,069,516	-		RR42_RS29880	0.73	+0.2
2,069,516	-		RR42_RS29880	0.73	-1.7
2,069,554	-		RR42_RS29880	0.77	-0.9
2,069,637	+		RR42_RS29880	0.84	+1.7
2,069,637	+		RR42_RS29880	0.84	+0.2
2,069,637	+		RR42_RS29880	0.84	-1.7
2,069,637	+		RR42_RS29880	0.84	-1.0
2,069,637	+		RR42_RS29880	0.84	-0.7
2,069,637	+		RR42_RS29880	0.84	-1.0
2,069,638	-		RR42_RS29880	0.85	+0.1
2,069,638	-		RR42_RS29880	0.85	-0.5
2,069,638	-		RR42_RS29880	0.85	-0.1
2,069,806	+				+0.5
2,069,807	-				+1.3
2,069,863	+				-0.9
2,069,892	+				+1.3
2,070,129	+		RR42_RS29885	0.21	-0.1
2,070,129	+		RR42_RS29885	0.21	+0.0
2,070,130	-		RR42_RS29885	0.21	-0.1
2,070,253	+		RR42_RS29885	0.30	-0.1
2,070,254	-		RR42_RS29885	0.30	-1.3
2,070,458	-		RR42_RS29885	0.43	-0.1
2,070,458	-		RR42_RS29885	0.43	+1.8
2,070,617	+		RR42_RS29885	0.54	+1.7
2,070,617	+		RR42_RS29885	0.54	+0.4
2,070,624	+		RR42_RS29885	0.54	+0.4
2,070,625	-		RR42_RS29885	0.54	+0.1
2,070,673	-		RR42_RS29885	0.57	+0.2
2,070,730	-		RR42_RS29885	0.61	-0.6
2,070,751	+		RR42_RS29885	0.63	-0.9
2,070,751	+		RR42_RS29885	0.63	+0.2
2,070,751	+		RR42_RS29885	0.63	+0.3
2,070,751	+		RR42_RS29885	0.63	+0.1
2,070,752	-		RR42_RS29885	0.63	-1.3
2,070,752	-		RR42_RS29885	0.63	+0.2
2,070,874	+		RR42_RS29885	0.71	+0.3
2,070,874	+		RR42_RS29885	0.71	-0.6
2,070,877	+		RR42_RS29885	0.71	-0.1
2,070,877	+		RR42_RS29885	0.71	+0.3
2,070,877	+		RR42_RS29885	0.71	-0.4
2,070,878	-		RR42_RS29885	0.71	-1.0
2,070,886	+		RR42_RS29885	0.71	-0.4
2,070,887	-		RR42_RS29885	0.72	+0.1
2,070,887	-		RR42_RS29885	0.72	-1.0
2,070,887	-		RR42_RS29885	0.72	-0.2
2,070,890	+		RR42_RS29885	0.72	+0.4
2,070,922	-		RR42_RS29885	0.74	-0.5
2,070,944	+		RR42_RS29885	0.75	+0.0
2,070,960	+		RR42_RS29885	0.76	+0.2
2,070,961	-		RR42_RS29885	0.76	-0.6
2,071,151	-		RR42_RS29885	0.89	+0.0
2,071,205	+				-1.2
2,071,205	+				+0.7
2,071,205	+				-1.3
2,071,206	-				-0.3
2,071,206	-				-0.0
2,071,230	+				+0.9
2,071,230	+				-1.3
2,071,280	+				+1.7
2,071,280	+				+2.0
2,071,281	-				+1.3
2,071,372	-				+0.6
2,071,400	-				+1.1
2,071,523	+				+0.2
2,071,523	+				-1.0
2,071,523	+				+0.4
2,071,524	-				-0.2
2,071,524	-				+0.3
2,071,526	+				-2.5
2,071,526	+				-1.3
2,071,527	-				+1.1
2,071,527	-				+4.0
2,071,527	-				-0.4
2,071,527	-				-0.5
2,071,571	-				+2.1
2,071,571	-				+0.2
2,071,585	+				+1.0
2,071,586	-				-2.2
2,071,586	-				-0.4
2,071,587	+				-0.9
2,071,587	+				+0.6
2,071,588	-				-0.5
2,071,588	-				-0.2
2,071,588	-				+0.2
2,071,588	-				-0.2
2,071,602	+				+0.1
2,071,679	-				+1.3
2,071,724	+				+1.2
2,071,724	+				-0.2
2,071,724	+				+0.3
2,071,724	+				-0.7
2,071,724	+				-1.0
2,071,725	-				+0.5
2,071,725	-				+0.5
2,071,725	-				+1.5
2,071,729	-				+0.7
2,071,729	-				+0.3
2,071,729	-				+0.2
2,071,764	-		RR42_RS29890	0.13	-1.3
2,071,804	+		RR42_RS29890	0.18	-2.3
2,071,818	-		RR42_RS29890	0.19	+0.9
2,071,852	-		RR42_RS29890	0.23	-0.5
2,071,862	+		RR42_RS29890	0.24	-0.0
2,071,862	+		RR42_RS29890	0.24	-2.4
2,071,863	-		RR42_RS29890	0.24	-1.2
2,071,863	-		RR42_RS29890	0.24	-1.3
2,071,952	+		RR42_RS29890	0.34	-1.4
2,071,952	+		RR42_RS29890	0.34	+0.5
2,071,952	+		RR42_RS29890	0.34	+1.3
2,071,953	-		RR42_RS29890	0.34	+0.2
2,072,020	-		RR42_RS29890	0.42	-0.6
2,072,020	-		RR42_RS29890	0.42	-0.8
2,072,020	-		RR42_RS29890	0.42	+1.1
2,072,020	-		RR42_RS29890	0.42	+0.7
2,072,020	-		RR42_RS29890	0.42	-1.3
2,072,024	-		RR42_RS29890	0.43	-1.0
2,072,083	-		RR42_RS29890	0.49	+2.5
2,072,161	+		RR42_RS29890	0.58	+0.7
2,072,162	-		RR42_RS29890	0.58	+1.3
2,072,178	+		RR42_RS29890	0.60	+1.7
2,072,179	-		RR42_RS29890	0.60	-0.1
2,072,294	+		RR42_RS29890	0.73	-1.3
2,072,294	+		RR42_RS29890	0.73	-1.2