Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29855

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,062,339	+		RR42_RS29850	0.21	+0.4
2,062,416	+		RR42_RS29850	0.28	-0.0
2,062,418	-		RR42_RS29850	0.28	-0.7
2,062,489	+		RR42_RS29850	0.34	-0.3
2,062,505	+		RR42_RS29850	0.36	-1.1
2,062,506	-		RR42_RS29850	0.36	+0.1
2,062,556	+		RR42_RS29850	0.40	+0.4
2,062,556	+		RR42_RS29850	0.40	+0.3
2,062,556	+		RR42_RS29850	0.40	+0.9
2,062,556	+		RR42_RS29850	0.40	-0.5
2,062,556	+		RR42_RS29850	0.40	+0.7
2,062,557	-		RR42_RS29850	0.40	+1.1
2,062,557	-		RR42_RS29850	0.40	+1.0
2,062,557	-		RR42_RS29850	0.40	-0.7
2,062,557	-		RR42_RS29850	0.40	-0.3
2,062,557	-		RR42_RS29850	0.40	+0.8
2,062,557	-		RR42_RS29850	0.40	+0.9
2,062,559	+		RR42_RS29850	0.40	-0.3
2,062,560	-		RR42_RS29850	0.41	-1.8
2,062,814	+		RR42_RS29850	0.64	+1.2
2,062,814	+		RR42_RS29850	0.64	+1.3
2,062,815	-		RR42_RS29850	0.64	+0.4
2,062,815	-		RR42_RS29850	0.64	-2.8
2,062,866	-		RR42_RS29850	0.68	+2.4
2,062,883	+		RR42_RS29850	0.70	+0.6
2,062,897	+		RR42_RS29850	0.71	+0.5
2,062,898	-		RR42_RS29850	0.71	+0.1
2,062,898	-		RR42_RS29850	0.71	+0.7
2,062,898	-		RR42_RS29850	0.71	+0.1
2,062,919	+		RR42_RS29850	0.73	-0.3
2,062,919	+		RR42_RS29850	0.73	-1.0
2,062,919	+		RR42_RS29850	0.73	-0.0
2,062,919	+		RR42_RS29850	0.73	+0.3
2,062,919	+		RR42_RS29850	0.73	-0.9
2,062,920	-		RR42_RS29850	0.73	-0.3
2,062,920	-		RR42_RS29850	0.73	+0.5
2,062,920	-		RR42_RS29850	0.73	+1.8
2,062,920	-		RR42_RS29850	0.73	-0.3
2,062,920	-		RR42_RS29850	0.73	+0.1
2,062,921	+		RR42_RS29850	0.73	-0.6
2,062,921	+		RR42_RS29850	0.73	+0.3
2,063,051	-		RR42_RS29850	0.85	+0.2
2,063,051	-		RR42_RS29850	0.85	+1.1
2,063,083	+		RR42_RS29850	0.88	-0.2
2,063,104	+		RR42_RS29850	0.90	+0.3
2,063,104	+		RR42_RS29850	0.90	+0.3
2,063,125	+				+1.0
2,063,125	+				+0.2
2,063,126	-				-0.9
2,063,126	-				-1.5
2,063,126	-				-0.2
2,063,126	-				+1.8
2,063,127	-				+0.6
2,063,186	-				-2.0
2,063,214	+				+0.4
2,063,214	+				-0.4
2,063,214	+				+0.5
2,063,214	+				-1.4
2,063,215	-				+1.3
2,063,215	-				-1.1
2,063,306	-				+0.7
2,063,306	-				-0.7
2,063,313	+				-0.4
2,063,314	-				+1.9
2,063,314	-				+0.4
2,063,321	-				-1.1
2,063,324	-				+0.6
2,063,376	+				+0.1
2,063,376	+				+3.0
2,063,377	-				-0.2
2,063,377	-				+0.1
2,063,377	-				+1.0
2,063,408	+				+0.7
2,063,408	+				+0.5
2,063,408	+				-1.7
2,063,478	+		RR42_RS29855	0.14	+0.7
2,063,479	-		RR42_RS29855	0.14	+0.7
2,063,479	-		RR42_RS29855	0.14	-0.2
2,063,479	-		RR42_RS29855	0.14	+1.0
2,063,750	+		RR42_RS29855	0.42	+0.6
2,063,750	+		RR42_RS29855	0.42	+0.3
2,063,751	-		RR42_RS29855	0.43	+0.2
2,063,751	-		RR42_RS29855	0.43	+0.5
2,063,751	-		RR42_RS29855	0.43	+0.0
2,063,751	-		RR42_RS29855	0.43	+0.4
2,063,773	+		RR42_RS29855	0.45	-0.9
2,063,773	+		RR42_RS29855	0.45	-1.3
2,063,807	+		RR42_RS29855	0.48	+0.2
2,063,807	+		RR42_RS29855	0.48	-1.3
2,063,808	-		RR42_RS29855	0.48	-0.1
2,063,868	+		RR42_RS29855	0.55	+0.1
2,063,869	-		RR42_RS29855	0.55	+0.2
2,063,869	-		RR42_RS29855	0.55	-0.3
2,063,954	-		RR42_RS29855	0.63	+0.5
2,063,978	-		RR42_RS29855	0.66	+1.6
2,064,029	-		RR42_RS29855	0.71	-0.5
2,064,029	-		RR42_RS29855	0.71	+0.3
2,064,046	+		RR42_RS29855	0.73	-0.5
2,064,046	+		RR42_RS29855	0.73	+0.9
2,064,047	-		RR42_RS29855	0.73	-0.4
2,064,047	-		RR42_RS29855	0.73	-0.9
2,064,079	+		RR42_RS29855	0.76	+0.3
2,064,079	+		RR42_RS29855	0.76	+0.5
2,064,080	-		RR42_RS29855	0.76	-0.2
2,064,098	+		RR42_RS29855	0.78	+1.0
2,064,099	-		RR42_RS29855	0.78	+0.7
2,064,099	-		RR42_RS29855	0.78	+1.3
2,064,242	+				+1.1
2,064,242	+				-0.7
2,064,247	+				-0.9
2,064,247	+				-0.5
2,064,247	+				+0.7
2,064,276	+				+1.5
2,064,280	+				-0.3
2,064,281	-				+0.7
2,064,296	-				-0.8
2,064,305	+				+1.0
2,064,342	+				-0.2
2,064,342	+				-0.6
2,064,343	-				-0.9
2,064,350	+				+1.1
2,064,350	+				-1.1
2,064,350	+				+0.8
2,064,351	-				-0.3
2,064,384	-				+0.9
2,064,391	+				+0.5
2,064,392	-				+0.0
2,064,440	+				-0.1
2,064,440	+				-0.3
2,064,441	-				-2.7
2,064,441	-				-0.7
2,064,441	-				-1.5
2,064,582	+		RR42_RS29860	0.15	+0.3
2,064,582	+		RR42_RS29860	0.15	-0.1
2,064,730	+		RR42_RS29860	0.25	-0.0
2,064,731	-		RR42_RS29860	0.25	+1.1
2,064,759	+		RR42_RS29860	0.27	-0.3
2,064,760	-		RR42_RS29860	0.27	-0.1
2,064,779	+		RR42_RS29860	0.29	+1.2
2,064,779	+		RR42_RS29860	0.29	-0.2
2,064,779	+		RR42_RS29860	0.29	-0.3
2,064,780	-		RR42_RS29860	0.29	-1.3
2,064,876	+		RR42_RS29860	0.35	-0.7
2,064,877	-		RR42_RS29860	0.36	+0.7
2,064,877	-		RR42_RS29860	0.36	-0.1
2,064,968	+		RR42_RS29860	0.42	-0.4
2,064,969	-		RR42_RS29860	0.42	+0.5
2,064,969	-		RR42_RS29860	0.42	-0.3
2,064,969	-		RR42_RS29860	0.42	+0.1
2,064,969	-		RR42_RS29860	0.42	+2.7
2,064,977	+		RR42_RS29860	0.43	+0.4
2,064,977	+		RR42_RS29860	0.43	+0.1
2,064,977	+		RR42_RS29860	0.43	-0.6
2,064,977	+		RR42_RS29860	0.43	+0.6
2,064,978	-		RR42_RS29860	0.43	+1.3
2,065,044	+		RR42_RS29860	0.47	-1.7
2,065,045	-		RR42_RS29860	0.47	-2.7
2,065,073	+		RR42_RS29860	0.49	+1.3
2,065,074	-		RR42_RS29860	0.49	+1.1
2,065,074	-		RR42_RS29860	0.49	-0.4
2,065,083	-		RR42_RS29860	0.50	+1.1
2,065,095	+		RR42_RS29860	0.51	-1.9
2,065,095	+		RR42_RS29860	0.51	+0.4
2,065,095	+		RR42_RS29860	0.51	+0.9
2,065,095	+		RR42_RS29860	0.51	+0.2
2,065,110	+		RR42_RS29860	0.52	+0.3
2,065,110	+		RR42_RS29860	0.52	+0.7
2,065,189	+		RR42_RS29860	0.57	+1.4
2,065,190	-		RR42_RS29860	0.57	-1.8
2,065,190	-		RR42_RS29860	0.57	-0.7
2,065,190	-		RR42_RS29860	0.57	-0.5
2,065,214	+		RR42_RS29860	0.59	-2.5
2,065,214	+		RR42_RS29860	0.59	-0.1
2,065,214	+		RR42_RS29860	0.59	+0.1
2,065,215	-		RR42_RS29860	0.59	-0.6
2,065,215	-		RR42_RS29860	0.59	+0.2
2,065,215	-		RR42_RS29860	0.59	+0.3
2,065,215	-		RR42_RS29860	0.59	-1.3
2,065,255	+		RR42_RS29860	0.62	-1.0
2,065,255	+		RR42_RS29860	0.62	-0.8
2,065,255	+		RR42_RS29860	0.62	-1.1
2,065,260	+		RR42_RS29860	0.62	-1.4
2,065,261	-		RR42_RS29860	0.62	+1.2
2,065,261	-		RR42_RS29860	0.62	-0.8
2,065,279	-		RR42_RS29860	0.64	-0.9