Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29840

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,059,727	-				+0.3
2,059,727	-				+0.7
2,059,727	-				+0.7
2,059,733	+				-0.4
2,059,733	+				-1.1
2,059,734	-				-0.3
2,059,759	+				-0.8
2,059,759	+				-0.4
2,059,759	+				-0.1
2,059,759	+				+0.5
2,059,760	-				+0.8
2,059,760	-				-1.3
2,059,766	+				-1.1
2,059,767	-				+0.1
2,059,767	-				+0.3
2,059,770	+				-0.4
2,059,771	-				+0.6
2,059,795	+				+0.6
2,059,795	+				-1.7
2,059,795	+				-0.2
2,059,856	+				-1.4
2,059,856	+				+0.6
2,059,856	+				+0.0
2,059,856	+				+0.7
2,059,856	+				-0.2
2,059,857	-				+0.3
2,059,877	+				+1.0
2,059,877	+				+0.4
2,059,877	+				+1.3
2,059,877	+				+0.2
2,059,877	+				+0.3
2,059,877	+				+0.5
2,059,877	+				+0.0
2,059,877	+				+1.8
2,059,878	-				-0.8
2,059,878	-				+0.9
2,059,878	-				-0.9
2,059,878	-				+0.2
2,059,878	-				+0.3
2,059,878	-				-0.0
2,059,881	+				+0.9
2,059,881	+				+0.6
2,059,881	+				+0.3
2,059,881	+				-0.0
2,059,881	+				+0.3
2,059,881	+				+0.2
2,059,881	+				+0.0
2,059,881	+				+0.3
2,059,881	+				+0.4
2,059,881	+				+0.1
2,059,881	+				-0.2
2,059,881	+				-0.9
2,059,881	+				-1.3
2,059,881	+				+0.2
2,059,881	+				+0.2
2,059,881	+				-0.2
2,059,881	+				+0.9
2,059,882	-				+0.1
2,059,882	-				+0.7
2,059,882	-				+0.3
2,059,882	-				+0.3
2,059,882	-				-0.7
2,059,882	-				-0.1
2,059,882	-				+1.4
2,059,882	-				-0.7
2,059,882	-				-0.2
2,059,882	-				-0.7
2,059,882	-				-0.0
2,059,882	-				-0.1
2,059,882	-				+0.3
2,059,882	-				+1.4
2,059,954	+				-0.9
2,059,954	+				+0.1
2,059,954	+				-2.1
2,059,971	-				+1.4
2,059,971	-				-0.9
2,059,988	+				-0.3
2,059,988	+				+0.3
2,059,989	-				-0.5
2,059,989	-				+1.0
2,059,992	+				-1.2
2,059,992	+				+0.9
2,060,003	+				+0.5
2,060,003	+				+0.3
2,060,004	-				+1.1
2,060,080	+				+0.1
2,060,081	-				+0.3
2,060,138	+				+0.3
2,060,138	+				-0.5
2,060,139	-				+1.3
2,060,172	+				-1.6
2,060,172	+				-0.4
2,060,172	+				-0.8
2,060,172	+				-0.3
2,060,172	+				+0.9
2,060,173	-				+0.8
2,060,173	-				+0.5
2,060,173	-				+0.8
2,060,173	-				-0.2
2,060,173	-				-0.7
2,060,173	-				-1.1
2,060,178	+				+1.1
2,060,178	+				-0.8
2,060,178	+				-0.9
2,060,178	+				-0.4
2,060,178	+				+2.0
2,060,179	+				-1.1
2,060,179	-				-0.1
2,060,179	-				-1.0
2,060,179	-				-0.1
2,060,179	-				+0.2
2,060,179	-				+1.1
2,060,179	-				+0.7
2,060,182	+				+2.5
2,060,182	+				-0.3
2,060,182	+				+0.2
2,060,182	+				+1.4
2,060,182	+				-0.3
2,060,182	+				+0.1
2,060,182	+				+1.1
2,060,183	-				-0.7
2,060,183	-				+1.7
2,060,183	-				-0.2
2,060,183	-				-0.1
2,060,183	-				+1.5
2,060,183	-				+0.1
2,060,183	-				+0.0
2,060,211	+				-0.6
2,060,211	+				+0.9
2,060,212	-				+1.1
2,060,212	-				+1.5
2,060,320	+				+0.0
2,060,320	+				-0.6
2,060,320	+				+0.5
2,060,320	+				-0.2
2,060,320	+				-0.9
2,060,320	+				+0.4
2,060,321	-				-1.8
2,060,321	-				-0.8
2,060,321	-				+0.9
2,060,321	-				+1.6
2,060,321	-				-0.9
2,060,321	-				+0.1
2,060,321	-				+0.1
2,060,321	-				+0.2
2,060,325	-				-0.3
2,060,325	-				+1.4
2,060,339	+				+1.3
2,060,339	+				-1.7
2,060,339	+				-0.4
2,060,339	+				+0.1
2,060,339	+				+0.9
2,060,340	-				+0.7
2,060,340	-				-0.1
2,060,340	-				-0.2
2,060,340	-				-0.3
2,060,340	-				-0.1
2,060,340	-				-0.4
2,060,340	-				+1.7
2,060,340	-				-0.7
2,060,341	+				-1.6
2,060,341	+				-1.3
2,060,341	+				-2.7
2,060,341	+				+0.1
2,060,341	+				+0.4
2,060,341	+				-0.6
2,060,342	-				+0.5
2,060,342	-				+0.5
2,060,342	-				+2.3
2,060,395	+				+1.7
2,060,395	+				-0.4
2,060,395	+				+0.7
2,060,396	-				+0.5
2,060,454	+				-0.2
2,060,454	+				+1.3
2,060,454	+				-1.9
2,060,455	-				+0.1
2,060,526	+				-1.2
2,060,527	-				-0.5
2,060,532	-				-0.8
2,060,567	+				+0.0
2,060,596	+				-0.4
2,060,596	+				-0.2
2,060,596	+				-0.0
2,060,596	+				-0.3
2,060,596	+				+2.3
2,060,596	+				-0.7
2,060,596	+				+1.0
2,060,596	+				-0.6
2,060,596	+				+1.7
2,060,596	+				+1.0
2,060,596	+				+0.7
2,060,596	+				-0.3
2,060,596	+				-0.5
2,060,597	-				-0.2
2,060,597	-				+0.9
2,060,597	-				-0.4
2,060,597	-				+0.1
2,060,597	-				-1.1
2,060,597	-				+0.5
2,060,597	-				-1.1
2,060,597	-				-1.0
2,060,597	-				+2.1
2,060,597	-				-1.9
2,060,597	-				-1.9
2,060,597	-				+0.3
2,060,597	-				-0.2
2,060,597	-				-0.8
2,060,597	-				+1.7
2,060,597	-				+1.7
2,060,754	+				+0.4
2,060,755	-				-0.1
2,060,755	-				+1.0
2,060,792	+				+0.6
2,060,792	+				-1.3
2,060,792	+				-0.3
2,060,793	-				+1.1
2,060,793	-				-0.0
2,060,793	-				+0.7
2,060,793	-				-0.7
2,060,793	-				-0.9
2,060,793	-				+0.1
2,060,833	-		RR42_RS29840	0.13	+0.6
2,060,833	-		RR42_RS29840	0.13	-0.1
2,060,870	+		RR42_RS29840	0.16	-0.6
2,060,870	+		RR42_RS29840	0.16	+4.4
2,060,870	+		RR42_RS29840	0.16	+0.3
2,060,871	-		RR42_RS29840	0.16	+1.3
2,060,871	-		RR42_RS29840	0.16	+0.0
2,060,871	-		RR42_RS29840	0.16	+1.0
2,060,883	-		RR42_RS29840	0.17	-1.1
2,060,883	-		RR42_RS29840	0.17	+0.3
2,060,933	+		RR42_RS29840	0.21	-1.7
2,060,936	+		RR42_RS29840	0.21	-0.1
2,061,052	+		RR42_RS29840	0.31	+0.3
2,061,052	+		RR42_RS29840	0.31	+3.5
2,061,114	-		RR42_RS29840	0.36	+0.2
2,061,114	-		RR42_RS29840	0.36	+0.6
2,061,114	-		RR42_RS29840	0.36	+0.3
2,061,123	-		RR42_RS29840	0.37	+1.0
2,061,163	-		RR42_RS29840	0.40	+1.5
2,061,212	+		RR42_RS29840	0.44	+0.5
2,061,213	-		RR42_RS29840	0.44	+0.9
2,061,264	+		RR42_RS29840	0.48	+0.8
2,061,264	+		RR42_RS29840	0.48	-0.1
2,061,265	-		RR42_RS29840	0.48	-0.6
2,061,265	-		RR42_RS29840	0.48	+0.3
2,061,265	-		RR42_RS29840	0.48	+1.1
2,061,265	-		RR42_RS29840	0.48	-1.3
2,061,311	+		RR42_RS29840	0.52	-0.9
2,061,311	+		RR42_RS29840	0.52	-0.1
2,061,312	-		RR42_RS29840	0.52	+0.1
2,061,340	+		RR42_RS29840	0.55	-0.0
2,061,341	-		RR42_RS29840	0.55	+0.3
2,061,341	-		RR42_RS29840	0.55	+0.2
2,061,341	-		RR42_RS29840	0.55	-0.4
2,061,422	+		RR42_RS29840	0.61	-0.3
2,061,422	+		RR42_RS29840	0.61	+1.0
2,061,528	+		RR42_RS29840	0.70	+0.9
2,061,619	+		RR42_RS29840	0.78	-0.8
2,061,619	+		RR42_RS29840	0.78	-0.3
2,061,620	-		RR42_RS29840	0.78	-0.7
2,061,620	-		RR42_RS29840	0.78	+0.4
2,061,620	-		RR42_RS29840	0.78	-1.4
2,061,858	+				+0.1
2,061,858	+				+1.4
2,061,858	+				+0.2
2,061,859	-				-0.4
2,061,859	-				-0.0
2,061,859	-				-0.0
2,061,859	-				+0.8
2,061,859	-				-0.1
2,061,859	-				+0.7
2,061,859	-				-0.5
2,061,859	-				+0.7
2,061,859	-				+0.7
2,061,859	-				+0.1
2,061,859	-				-2.3
2,061,888	+				+0.0
2,061,889	-				-0.0
2,062,287	-		RR42_RS29850	0.16	-1.0
2,062,339	+		RR42_RS29850	0.21	+0.4
2,062,416	+		RR42_RS29850	0.28	-0.0
2,062,418	-		RR42_RS29850	0.28	-0.7
2,062,489	+		RR42_RS29850	0.34	-0.3
2,062,505	+		RR42_RS29850	0.36	-1.1
2,062,506	-		RR42_RS29850	0.36	+0.1
2,062,556	+		RR42_RS29850	0.40	+0.4
2,062,556	+		RR42_RS29850	0.40	+0.3
2,062,556	+		RR42_RS29850	0.40	+0.9
2,062,556	+		RR42_RS29850	0.40	-0.5
2,062,556	+		RR42_RS29850	0.40	+0.7
2,062,557	-		RR42_RS29850	0.40	+1.1
2,062,557	-		RR42_RS29850	0.40	+1.0
2,062,557	-		RR42_RS29850	0.40	-0.7
2,062,557	-		RR42_RS29850	0.40	-0.3
2,062,557	-		RR42_RS29850	0.40	+0.8
2,062,557	-		RR42_RS29850	0.40	+0.9
2,062,559	+		RR42_RS29850	0.40	-0.3
2,062,560	-		RR42_RS29850	0.41	-1.8
2,062,814	+		RR42_RS29850	0.64	+1.2
2,062,814	+		RR42_RS29850	0.64	+1.3
2,062,815	-		RR42_RS29850	0.64	+0.4
2,062,815	-		RR42_RS29850	0.64	-2.8
2,062,866	-		RR42_RS29850	0.68	+2.4
2,062,883	+		RR42_RS29850	0.70	+0.6