Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29835

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,057,222	+		RR42_RS29830	0.40	-1.4
2,057,236	-		RR42_RS29830	0.41	+0.6
2,057,236	-		RR42_RS29830	0.41	+0.8
2,057,249	-		RR42_RS29830	0.42	-0.3
2,057,249	-		RR42_RS29830	0.42	-0.4
2,057,339	-		RR42_RS29830	0.48	+0.8
2,057,474	+		RR42_RS29830	0.56	-0.7
2,057,474	+		RR42_RS29830	0.56	+0.2
2,057,518	+		RR42_RS29830	0.59	+0.4
2,057,551	+		RR42_RS29830	0.61	-1.1
2,057,568	+		RR42_RS29830	0.62	+0.2
2,057,574	+		RR42_RS29830	0.62	+0.3
2,057,605	+		RR42_RS29830	0.64	+0.3
2,057,605	+		RR42_RS29830	0.64	+0.3
2,057,605	+		RR42_RS29830	0.64	-0.4
2,057,606	-		RR42_RS29830	0.64	-0.3
2,057,614	-		RR42_RS29830	0.65	-0.6
2,057,687	+		RR42_RS29830	0.69	-0.4
2,057,688	-		RR42_RS29830	0.69	+0.5
2,057,724	+		RR42_RS29830	0.72	-0.2
2,057,725	-		RR42_RS29830	0.72	-0.7
2,057,749	-		RR42_RS29830	0.73	+0.9
2,057,777	+		RR42_RS29830	0.75	+0.0
2,057,826	+		RR42_RS29830	0.78	-0.3
2,057,826	+		RR42_RS29830	0.78	+0.7
2,057,827	-		RR42_RS29830	0.78	+0.7
2,057,827	-		RR42_RS29830	0.78	-0.3
2,057,866	-		RR42_RS29830	0.81	-0.4
2,057,887	+		RR42_RS29830	0.82	+0.2
2,057,940	-		RR42_RS29830	0.85	+0.7
2,057,942	-		RR42_RS29830	0.85	+0.1
2,057,943	+		RR42_RS29830	0.85	-0.2
2,057,943	+		RR42_RS29830	0.85	+0.3
2,057,943	+		RR42_RS29830	0.85	+0.3
2,057,943	+		RR42_RS29830	0.85	-0.6
2,057,944	-		RR42_RS29830	0.85	+1.1
2,057,944	-		RR42_RS29830	0.85	+2.3
2,057,947	+		RR42_RS29830	0.86	-1.8
2,058,010	+		RR42_RS29830	0.89	+0.4
2,058,011	-		RR42_RS29830	0.90	+0.7
2,058,012	+		RR42_RS29830	0.90	+0.2
2,058,083	+				+0.7
2,058,156	+				-0.7
2,058,157	-				+0.3
2,058,157	-				+0.9
2,058,157	-				+1.4
2,058,162	+				-0.7
2,058,162	+				-0.7
2,058,163	-				-0.1
2,058,163	-				-0.8
2,058,163	-				-0.7
2,058,166	+				-0.9
2,058,270	+				+0.4
2,058,308	+				+0.0
2,058,308	+				+1.0
2,058,308	+				-1.3
2,058,308	+				+0.8
2,058,308	+				+0.4
2,058,309	-				+0.1
2,058,337	+		RR42_RS29835	0.11	-2.0
2,058,338	-		RR42_RS29835	0.11	+0.3
2,058,338	-		RR42_RS29835	0.11	-0.2
2,058,388	-		RR42_RS29835	0.15	+0.3
2,058,388	-		RR42_RS29835	0.15	-0.2
2,058,408	+		RR42_RS29835	0.16	-1.2
2,058,427	+		RR42_RS29835	0.18	+0.6
2,058,427	+		RR42_RS29835	0.18	-0.6
2,058,427	+		RR42_RS29835	0.18	-0.3
2,058,427	+		RR42_RS29835	0.18	+0.3
2,058,427	+		RR42_RS29835	0.18	-2.8
2,058,428	-		RR42_RS29835	0.18	+0.0
2,058,428	-		RR42_RS29835	0.18	+0.6
2,058,428	-		RR42_RS29835	0.18	+0.4
2,058,448	+		RR42_RS29835	0.19	-0.2
2,058,448	+		RR42_RS29835	0.19	+0.5
2,058,449	-		RR42_RS29835	0.19	-0.2
2,058,502	+		RR42_RS29835	0.23	-0.9
2,058,502	+		RR42_RS29835	0.23	+0.0
2,058,502	+		RR42_RS29835	0.23	+0.4
2,058,502	+		RR42_RS29835	0.23	+0.2
2,058,502	+		RR42_RS29835	0.23	+0.7
2,058,502	+		RR42_RS29835	0.23	+0.7
2,058,502	+		RR42_RS29835	0.23	-0.1
2,058,503	-		RR42_RS29835	0.23	+1.7
2,058,503	-		RR42_RS29835	0.23	-0.1
2,058,503	-		RR42_RS29835	0.23	-0.7
2,058,503	-		RR42_RS29835	0.23	-0.3
2,058,516	+		RR42_RS29835	0.24	+0.0
2,058,543	+		RR42_RS29835	0.26	+2.7
2,058,543	+		RR42_RS29835	0.26	+0.3
2,058,543	+		RR42_RS29835	0.26	+1.5
2,058,544	-		RR42_RS29835	0.27	+0.3
2,058,544	-		RR42_RS29835	0.27	+0.3
2,058,544	-		RR42_RS29835	0.27	-0.4
2,058,544	-		RR42_RS29835	0.27	+1.0
2,058,601	+		RR42_RS29835	0.31	+0.8
2,058,601	+		RR42_RS29835	0.31	-1.7
2,058,602	-		RR42_RS29835	0.31	+0.1
2,058,602	-		RR42_RS29835	0.31	-0.3
2,058,602	-		RR42_RS29835	0.31	+0.1
2,058,751	+		RR42_RS29835	0.42	+0.3
2,058,751	+		RR42_RS29835	0.42	+1.3
2,058,752	-		RR42_RS29835	0.42	+2.0
2,058,763	+		RR42_RS29835	0.43	+0.7
2,058,764	-		RR42_RS29835	0.43	+0.3
2,058,778	+		RR42_RS29835	0.44	+0.1
2,058,779	-		RR42_RS29835	0.44	-2.7
2,058,779	-		RR42_RS29835	0.44	-0.1
2,058,781	+		RR42_RS29835	0.44	+0.5
2,058,782	-		RR42_RS29835	0.44	+0.2
2,058,805	-		RR42_RS29835	0.46	-0.6
2,058,805	-		RR42_RS29835	0.46	+0.2
2,059,070	+		RR42_RS29835	0.66	-0.2
2,059,070	+		RR42_RS29835	0.66	+0.6
2,059,070	+		RR42_RS29835	0.66	-0.7
2,059,071	-		RR42_RS29835	0.66	-0.1
2,059,186	-		RR42_RS29835	0.75	-0.0
2,059,231	-		RR42_RS29835	0.78	-0.3
2,059,287	-		RR42_RS29835	0.82	-2.4
2,059,441	+				-1.7
2,059,442	-				+0.4
2,059,447	+				-0.0
2,059,447	+				-0.3
2,059,447	+				+0.1
2,059,447	+				+2.1
2,059,447	+				+0.5
2,059,447	+				-1.8
2,059,447	+				-2.0
2,059,447	+				-0.0
2,059,447	+				-0.7
2,059,447	+				-1.3
2,059,448	-				+2.7
2,059,448	-				+0.3
2,059,448	-				+0.2
2,059,448	-				+0.7
2,059,448	-				-0.6
2,059,448	-				-0.2
2,059,448	-				-0.3
2,059,448	-				-1.2
2,059,448	-				+0.2
2,059,448	-				+0.5
2,059,448	-				-0.5
2,059,448	-				-1.0
2,059,456	+				-0.3
2,059,584	+				-0.3
2,059,584	+				+0.8
2,059,585	-				+3.1
2,059,586	+				+0.2
2,059,587	-				+0.2
2,059,587	-				+0.1
2,059,616	+				-0.2
2,059,616	+				+0.2
2,059,616	+				+0.6
2,059,622	+				-1.5
2,059,623	-				-0.3
2,059,623	-				-1.2
2,059,623	-				+1.3
2,059,623	-				+1.3
2,059,623	-				+0.8
2,059,664	+				-2.3
2,059,664	+				+0.3
2,059,665	-				+2.3
2,059,727	-				+0.3
2,059,727	-				+0.7
2,059,727	-				+0.7
2,059,733	+				-0.4
2,059,733	+				-1.1
2,059,734	-				-0.3
2,059,759	+				-0.8
2,059,759	+				-0.4
2,059,759	+				-0.1
2,059,759	+				+0.5
2,059,760	-				+0.8
2,059,760	-				-1.3
2,059,766	+				-1.1
2,059,767	-				+0.1
2,059,767	-				+0.3
2,059,770	+				-0.4
2,059,771	-				+0.6
2,059,795	+				+0.6
2,059,795	+				-1.7
2,059,795	+				-0.2
2,059,856	+				-1.4
2,059,856	+				+0.6
2,059,856	+				+0.0
2,059,856	+				+0.7
2,059,856	+				-0.2
2,059,857	-				+0.3
2,059,877	+				+1.0
2,059,877	+				+0.4
2,059,877	+				+1.3
2,059,877	+				+0.2
2,059,877	+				+0.3
2,059,877	+				+0.5
2,059,877	+				+0.0
2,059,877	+				+1.8
2,059,878	-				-0.8
2,059,878	-				+0.9
2,059,878	-				-0.9
2,059,878	-				+0.2
2,059,878	-				+0.3
2,059,878	-				-0.0
2,059,881	+				+0.9
2,059,881	+				+0.6
2,059,881	+				+0.3
2,059,881	+				-0.0
2,059,881	+				+0.3
2,059,881	+				+0.2
2,059,881	+				+0.0
2,059,881	+				+0.3
2,059,881	+				+0.4
2,059,881	+				+0.1
2,059,881	+				-0.2
2,059,881	+				-0.9
2,059,881	+				-1.3
2,059,881	+				+0.2
2,059,881	+				+0.2
2,059,881	+				-0.2
2,059,881	+				+0.9
2,059,882	-				+0.1
2,059,882	-				+0.7
2,059,882	-				+0.3
2,059,882	-				+0.3
2,059,882	-				-0.7
2,059,882	-				-0.1
2,059,882	-				+1.4
2,059,882	-				-0.7
2,059,882	-				-0.2
2,059,882	-				-0.7
2,059,882	-				-0.0
2,059,882	-				-0.1
2,059,882	-				+0.3
2,059,882	-				+1.4
2,059,954	+				-0.9
2,059,954	+				+0.1
2,059,954	+				-2.1
2,059,971	-				+1.4
2,059,971	-				-0.9
2,059,988	+				-0.3
2,059,988	+				+0.3
2,059,989	-				-0.5
2,059,989	-				+1.0
2,059,992	+				-1.2
2,059,992	+				+0.9
2,060,003	+				+0.5
2,060,003	+				+0.3
2,060,004	-				+1.1
2,060,080	+				+0.1
2,060,081	-				+0.3
2,060,138	+				+0.3
2,060,138	+				-0.5
2,060,139	-				+1.3
2,060,172	+				-1.6
2,060,172	+				-0.4
2,060,172	+				-0.8
2,060,172	+				-0.3
2,060,172	+				+0.9
2,060,173	-				+0.8
2,060,173	-				+0.5
2,060,173	-				+0.8
2,060,173	-				-0.2
2,060,173	-				-0.7
2,060,173	-				-1.1
2,060,178	+				+1.1
2,060,178	+				-0.8
2,060,178	+				-0.9
2,060,178	+				-0.4
2,060,178	+				+2.0
2,060,179	+				-1.1
2,060,179	-				-0.1
2,060,179	-				-1.0
2,060,179	-				-0.1
2,060,179	-				+0.2
2,060,179	-				+1.1
2,060,179	-				+0.7
2,060,182	+				+2.5
2,060,182	+				-0.3
2,060,182	+				+0.2
2,060,182	+				+1.4
2,060,182	+				-0.3
2,060,182	+				+0.1
2,060,182	+				+1.1
2,060,183	-				-0.7
2,060,183	-				+1.7
2,060,183	-				-0.2
2,060,183	-				-0.1
2,060,183	-				+1.5
2,060,183	-				+0.1
2,060,183	-				+0.0
2,060,211	+				-0.6
2,060,211	+				+0.9
2,060,212	-				+1.1
2,060,212	-				+1.5
2,060,320	+				+0.0
2,060,320	+				-0.6
2,060,320	+				+0.5
2,060,320	+				-0.2
2,060,320	+				-0.9
2,060,320	+				+0.4
2,060,321	-				-1.8
2,060,321	-				-0.8
2,060,321	-				+0.9
2,060,321	-				+1.6
2,060,321	-				-0.9
2,060,321	-				+0.1
2,060,321	-				+0.1
2,060,321	-				+0.2
2,060,325	-				-0.3
2,060,325	-				+1.4
2,060,339	+				+1.3
2,060,339	+				-1.7
2,060,339	+				-0.4
2,060,339	+				+0.1
2,060,339	+				+0.9
2,060,340	-				+0.7
2,060,340	-				-0.1
2,060,340	-				-0.2
2,060,340	-				-0.3
2,060,340	-				-0.1
2,060,340	-				-0.4
2,060,340	-				+1.7
2,060,340	-				-0.7
2,060,341	+				-1.6
2,060,341	+				-1.3
2,060,341	+				-2.7
2,060,341	+				+0.1
2,060,341	+				+0.4
2,060,341	+				-0.6
2,060,342	-				+0.5
2,060,342	-				+0.5
2,060,342	-				+2.3
2,060,395	+				+1.7
2,060,395	+				-0.4
2,060,395	+				+0.7
2,060,396	-				+0.5
2,060,454	+				-0.2
2,060,454	+				+1.3
2,060,454	+				-1.9
2,060,455	-				+0.1
2,060,526	+				-1.2