Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29475

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,968,393	+		RR42_RS29470	0.28	+1.3
1,968,466	+		RR42_RS29470	0.34	+0.3
1,968,466	+		RR42_RS29470	0.34	+1.2
1,968,466	+		RR42_RS29470	0.34	+0.2
1,968,466	+		RR42_RS29470	0.34	-0.8
1,968,467	-		RR42_RS29470	0.34	+1.2
1,968,467	-		RR42_RS29470	0.34	-2.8
1,968,467	-		RR42_RS29470	0.34	-0.3
1,968,467	-		RR42_RS29470	0.34	-0.6
1,968,467	-		RR42_RS29470	0.34	-0.1
1,968,467	-		RR42_RS29470	0.34	+0.2
1,968,467	-		RR42_RS29470	0.34	+0.1
1,968,467	-		RR42_RS29470	0.34	-0.2
1,968,484	+		RR42_RS29470	0.36	+0.1
1,968,484	+		RR42_RS29470	0.36	-1.1
1,968,485	-		RR42_RS29470	0.36	-0.3
1,968,485	-		RR42_RS29470	0.36	-0.4
1,968,485	-		RR42_RS29470	0.36	+0.7
1,968,538	+		RR42_RS29470	0.40	-0.5
1,968,538	+		RR42_RS29470	0.40	+0.0
1,968,539	-		RR42_RS29470	0.40	+1.4
1,968,539	-		RR42_RS29470	0.40	-2.0
1,968,539	-		RR42_RS29470	0.40	-1.2
1,968,539	-		RR42_RS29470	0.40	-0.3
1,968,580	+		RR42_RS29470	0.44	-0.9
1,968,580	+		RR42_RS29470	0.44	+1.2
1,968,581	-		RR42_RS29470	0.44	+0.7
1,968,629	-		RR42_RS29470	0.48	-0.4
1,968,670	+		RR42_RS29470	0.52	+0.1
1,968,670	+		RR42_RS29470	0.52	-0.9
1,968,671	-		RR42_RS29470	0.52	+0.6
1,968,671	-		RR42_RS29470	0.52	-2.5
1,968,833	-		RR42_RS29470	0.66	+0.4
1,968,907	+		RR42_RS29470	0.72	+1.2
1,968,953	-		RR42_RS29470	0.76	-1.3
1,968,985	+		RR42_RS29470	0.79	-0.4
1,968,985	+		RR42_RS29470	0.79	-0.2
1,968,986	-		RR42_RS29470	0.79	+0.2
1,969,000	+		RR42_RS29470	0.80	-0.2
1,969,010	-		RR42_RS29470	0.81	+0.6
1,969,094	+		RR42_RS29470	0.88	-0.9
1,969,094	+		RR42_RS29470	0.88	-0.3
1,969,094	+		RR42_RS29470	0.88	-0.6
1,969,398	+				-0.1
1,969,398	+				+0.2
1,969,399	-				+0.9
1,969,399	-				-0.0
1,969,401	-				-0.1
1,969,438	-		RR42_RS29475	0.10	+0.0
1,969,587	+		RR42_RS29475	0.19	-0.4
1,969,587	+		RR42_RS29475	0.19	-0.0
1,969,588	-		RR42_RS29475	0.19	-1.1
1,969,588	-		RR42_RS29475	0.19	-0.2
1,969,588	-		RR42_RS29475	0.19	-1.2
1,969,588	-		RR42_RS29475	0.19	+0.9
1,969,588	-		RR42_RS29475	0.19	+0.2
1,969,588	-		RR42_RS29475	0.19	-1.7
1,969,854	+		RR42_RS29475	0.35	+0.7
1,969,854	+		RR42_RS29475	0.35	+2.0
1,969,855	-		RR42_RS29475	0.35	+0.9
1,969,855	-		RR42_RS29475	0.35	-0.8
1,969,855	-		RR42_RS29475	0.35	+1.1
1,969,970	+		RR42_RS29475	0.42	-0.0
1,969,971	-		RR42_RS29475	0.42	+0.9
1,970,012	+		RR42_RS29475	0.45	+0.2
1,970,012	+		RR42_RS29475	0.45	-0.7
1,970,012	+		RR42_RS29475	0.45	-1.7
1,970,012	+		RR42_RS29475	0.45	-0.5
1,970,012	+		RR42_RS29475	0.45	+0.4
1,970,013	-		RR42_RS29475	0.45	+0.6
1,970,013	-		RR42_RS29475	0.45	+1.4
1,970,133	+		RR42_RS29475	0.52	+0.4
1,970,133	+		RR42_RS29475	0.52	+1.2
1,970,199	+		RR42_RS29475	0.56	-2.3
1,970,199	+		RR42_RS29475	0.56	+0.7
1,970,200	-		RR42_RS29475	0.56	+0.2
1,970,200	-		RR42_RS29475	0.56	+0.1
1,970,200	-		RR42_RS29475	0.56	-0.5
1,970,200	-		RR42_RS29475	0.56	+0.3
1,970,292	+		RR42_RS29475	0.62	+3.2
1,970,293	-		RR42_RS29475	0.62	+0.0
1,970,293	-		RR42_RS29475	0.62	+0.0
1,970,464	-		RR42_RS29475	0.72	+0.2
1,970,466	+		RR42_RS29475	0.72	+1.2
1,970,466	+		RR42_RS29475	0.72	-0.1
1,970,466	+		RR42_RS29475	0.72	+0.0
1,970,466	+		RR42_RS29475	0.72	-0.5
1,970,466	+		RR42_RS29475	0.72	-0.7
1,970,466	+		RR42_RS29475	0.72	+0.2
1,970,466	+		RR42_RS29475	0.72	-1.0
1,970,467	-				+0.7
1,970,467	-		RR42_RS29475	0.73	+2.0
1,970,467	-		RR42_RS29475	0.73	-1.7
1,970,467	-		RR42_RS29475	0.73	+0.7
1,970,883	+				-0.6
1,970,883	+				+1.3
1,970,883	+				-0.6
1,970,884	-				-1.9
1,970,884	-				+0.3
1,970,884	-				-0.4
1,970,944	+				+1.0
1,970,944	+				+1.0
1,970,945	-				-0.2
1,970,945	-				-0.3
1,970,958	-				-0.3
1,970,958	-				+0.7
1,970,958	-				+0.4
1,970,958	-				+1.4
1,970,994	+				+0.3
1,970,995	-				+0.4
1,971,053	-				+0.3
1,971,222	+				+1.2
1,971,223	-				+1.0
1,971,276	+		RR42_RS29480	0.15	+0.9
1,971,276	+		RR42_RS29480	0.15	-1.3
1,971,276	+		RR42_RS29480	0.15	+1.5
1,971,276	+		RR42_RS29480	0.15	+0.1
1,971,276	+		RR42_RS29480	0.15	-0.3
1,971,277	-		RR42_RS29480	0.15	-0.2
1,971,296	+		RR42_RS29480	0.18	-1.2
1,971,296	+		RR42_RS29480	0.18	+0.4
1,971,357	+		RR42_RS29480	0.26	-0.2
1,971,357	+		RR42_RS29480	0.26	+0.0
1,971,357	+		RR42_RS29480	0.26	+0.5
1,971,357	+		RR42_RS29480	0.26	-1.1
1,971,357	+		RR42_RS29480	0.26	+0.5
1,971,358	-		RR42_RS29480	0.26	+0.5
1,971,358	-		RR42_RS29480	0.26	+0.6
1,971,451	+		RR42_RS29480	0.38	-0.7
1,971,516	+		RR42_RS29480	0.46	-0.5
1,971,517	-		RR42_RS29480	0.46	+0.9
1,971,517	-		RR42_RS29480	0.46	+0.8
1,971,789	+		RR42_RS29480	0.82	-0.9
1,971,789	+		RR42_RS29480	0.82	+0.3
1,971,790	-		RR42_RS29480	0.82	+0.6
1,971,790	-		RR42_RS29480	0.82	+0.0
1,971,790	-		RR42_RS29480	0.82	+0.2
1,971,790	-		RR42_RS29480	0.82	-0.3
1,971,790	-		RR42_RS29480	0.82	+0.1
1,971,790	-		RR42_RS29480	0.82	+0.1
1,971,900	-				+1.4