Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28145

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,670,649	+				-1.0
1,670,684	-				-0.3
1,670,759	-				-0.2
1,670,759	-				-0.8
1,670,759	-				-0.4
1,670,769	+				+0.3
1,670,770	-				-0.3
1,670,780	-				-0.8
1,670,847	+				-1.0
1,670,847	+				-0.1
1,670,847	+				-1.0
1,670,907	-				-0.1
1,670,907	-				+0.1
1,671,047	+		RR42_RS28140	0.23	-0.8
1,671,257	-		RR42_RS28140	0.55	-0.8
1,671,257	-		RR42_RS28140	0.55	+0.1
1,671,361	+		RR42_RS28140	0.72	-1.5
1,671,361	+		RR42_RS28140	0.72	+1.1
1,671,518	+				-1.5
1,671,754	+		RR42_RS28145	0.21	-1.1
1,671,754	+		RR42_RS28145	0.21	+2.1
1,671,938	+		RR42_RS28145	0.43	-0.1
1,672,038	+		RR42_RS28145	0.54	+1.9
1,672,147	+		RR42_RS28145	0.67	+0.8
1,672,469	-				-0.5
1,672,470	+				+2.3
1,672,470	+				-0.9
1,672,506	-				-0.5
1,672,616	+				-0.1
1,672,616	+				-1.6
1,672,778	+		RR42_RS28150	0.11	-1.5
1,672,779	-		RR42_RS28150	0.11	+0.0
1,672,779	-		RR42_RS28150	0.11	+0.4
1,672,851	-		RR42_RS28150	0.16	+0.2
1,673,012	+		RR42_RS28150	0.28	+1.3
1,673,013	-		RR42_RS28150	0.28	+0.6
1,673,013	-		RR42_RS28150	0.28	+0.3
1,673,160	+		RR42_RS28150	0.39	-2.7
1,673,169	-		RR42_RS28150	0.39	+0.7
1,673,169	-		RR42_RS28150	0.39	+0.7
1,673,169	-		RR42_RS28150	0.39	+0.3
1,673,339	+		RR42_RS28150	0.51	+0.7
1,673,339	+		RR42_RS28150	0.51	+0.1
1,673,339	+		RR42_RS28150	0.51	+0.8
1,673,340	-		RR42_RS28150	0.51	+0.3