Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27890

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,619,002	-				-0.2
1,619,507	+		RR42_RS27885	0.49	+0.1
1,619,557	+		RR42_RS27885	0.55	-0.3
1,619,565	-		RR42_RS27885	0.56	-0.2
1,620,224	+		RR42_RS27890	0.27	+0.4
1,620,224	+		RR42_RS27890	0.27	-0.3
1,620,225	-		RR42_RS27890	0.28	+0.3
1,620,225	-		RR42_RS27890	0.28	-1.1
1,620,392	-		RR42_RS27890	0.45	+0.8
1,620,426	+		RR42_RS27890	0.48	+0.7
1,620,426	+		RR42_RS27890	0.48	-0.5
1,620,514	-		RR42_RS27890	0.57	+0.6
1,621,292	+		RR42_RS27895	0.35	+1.3
1,621,415	+		RR42_RS27895	0.48	-0.0
1,621,415	+		RR42_RS27895	0.48	-0.7
1,621,595	+		RR42_RS27895	0.67	+0.5
1,621,595	+				-1.6
1,621,596	-		RR42_RS27895	0.67	-0.4
1,621,596	-		RR42_RS27895	0.67	+0.1
1,621,596	-		RR42_RS27895	0.67	-1.0
1,621,596	-		RR42_RS27895	0.67	+0.5
1,621,808	+		RR42_RS27895	0.89	-0.5
1,621,809	-		RR42_RS27895	0.89	-0.6
1,621,820	+				-3.5
1,621,926	-				+0.7