Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27875

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,615,445	+				-1.1
1,615,517	+		RR42_RS27870	0.18	+1.0
1,615,518	-		RR42_RS27870	0.18	+0.2
1,615,931	+		RR42_RS27870	0.64	-0.7
1,615,932	-		RR42_RS27870	0.65	+1.1
1,615,932	-		RR42_RS27870	0.65	+0.1
1,616,024	+		RR42_RS27870	0.75	+0.2
1,616,025	-		RR42_RS27870	0.75	-0.8
1,616,386	-				+1.1
1,616,560	+		RR42_RS27875	0.16	+0.4
1,616,629	+		RR42_RS27875	0.20	+0.0
1,616,792	+		RR42_RS27875	0.29	-1.3
1,616,920	+		RR42_RS27875	0.36	-2.1
1,616,920	+		RR42_RS27875	0.36	+0.3
1,616,920	+		RR42_RS27875	0.36	-0.2
1,616,921	-		RR42_RS27875	0.36	-1.3
1,616,921	-		RR42_RS27875	0.36	+0.5
1,616,921	-		RR42_RS27875	0.36	-0.4
1,616,924	+		RR42_RS27875	0.36	-0.6
1,616,925	-		RR42_RS27875	0.36	-2.8
1,616,925	-		RR42_RS27875	0.36	-2.3
1,616,951	+		RR42_RS27875	0.38	-0.3
1,616,951	+		RR42_RS27875	0.38	-2.7
1,616,952	-		RR42_RS27875	0.38	-0.3
1,617,092	+		RR42_RS27875	0.46	-1.0
1,617,093	-		RR42_RS27875	0.46	+0.2
1,617,210	-		RR42_RS27875	0.52	-0.2
1,617,210	-		RR42_RS27875	0.52	-1.8
1,617,299	+		RR42_RS27875	0.57	+0.8
1,617,300	-		RR42_RS27875	0.57	-0.1
1,617,446	+		RR42_RS27875	0.65	+0.4
1,617,446	+		RR42_RS27875	0.65	-0.1
1,617,706	+		RR42_RS27875	0.80	+0.2
1,617,707	-		RR42_RS27875	0.80	-1.4
1,617,980	-				+0.6
1,618,094	-				+0.7
1,619,002	-				-0.2