Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27690

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,575,846	+				-1.3
1,575,847	-		RR42_RS27685	0.71	-0.6
1,575,861	+		RR42_RS27685	0.72	-1.0
1,575,862	-		RR42_RS27685	0.72	+1.1
1,575,894	+		RR42_RS27685	0.73	-0.9
1,575,895	-		RR42_RS27685	0.73	-1.3
1,576,340	-		RR42_RS27685	0.87	-0.1
1,576,340	-		RR42_RS27685	0.87	+0.7
1,576,665	+				-1.2
1,576,665	+				-0.1
1,576,666	-				-0.4
1,576,666	-				+0.6
1,576,758	+				-0.3
1,576,758	+				-0.2
1,576,759	-				+0.4
1,576,807	-				-0.1
1,576,883	+				+0.1
1,576,923	-				+0.3
1,577,261	+		RR42_RS27690	0.31	-0.8
1,577,262	-		RR42_RS27690	0.31	-0.3
1,577,777	+		RR42_RS27690	0.64	+0.6
1,578,028	-		RR42_RS27690	0.81	-0.9
1,578,110	+		RR42_RS27690	0.86	-0.1
1,578,131	+		RR42_RS27690	0.88	+0.3
1,578,132	-		RR42_RS27690	0.88	+0.6
1,578,157	+		RR42_RS27690	0.89	-1.3
1,578,158	-		RR42_RS27690	0.89	-2.0
1,578,158	-		RR42_RS27690	0.89	-0.6
1,578,412	+				-0.4
1,578,413	-				+0.4
1,578,417	+				-1.3
1,578,417	+				+1.4
1,578,417	+				+0.2
1,578,417	+				+0.7
1,578,417	+				+2.0
1,578,418	-				-0.3
1,578,418	-				+1.0
1,578,418	-				+0.4
1,578,641	+		RR42_RS27695	0.15	-1.3
1,578,691	-		RR42_RS27695	0.24	-1.0
1,578,912	+		RR42_RS27695	0.65	+0.5
1,578,913	-		RR42_RS27695	0.65	-0.2
1,579,178	-				-1.6
1,579,178	-				+2.3
1,579,293	+				+1.2
1,579,296	-				-1.3