Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27615

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,558,904	+		RR42_RS27610	0.48	-0.6
1,558,905	-		RR42_RS27610	0.48	+0.1
1,558,966	+		RR42_RS27610	0.53	+0.6
1,558,966	+		RR42_RS27610	0.53	+0.2
1,558,967	-		RR42_RS27610	0.53	-0.7
1,558,967	-		RR42_RS27610	0.53	-0.9
1,559,078	-		RR42_RS27610	0.62	+0.5
1,559,192	-		RR42_RS27610	0.71	+0.8
1,559,255	-		RR42_RS27610	0.76	+0.1
1,559,386	+		RR42_RS27610	0.86	-0.3
1,559,387	-		RR42_RS27610	0.86	-0.3
1,559,387	-		RR42_RS27610	0.86	-0.2
1,559,394	+		RR42_RS27610	0.87	-0.3
1,559,461	+				-0.9
1,559,472	+				+1.0
1,559,473	-				+0.2
1,559,473	-				-0.6
1,559,473	-				+0.4
1,559,473	-				+1.5
1,559,473	-				-0.2
1,559,474	+				+0.6
1,559,475	-				-0.3
1,559,475	-				+0.1
1,559,475	-				-1.1
1,559,506	+				+0.2
1,559,507	-				-0.8
1,559,534	-				+2.3
1,559,564	+				-0.6
1,559,633	+				+0.3
1,559,634	-				+0.5
1,559,634	-				-1.2
1,559,708	+				+0.2
1,559,709	-				+0.3
1,560,096	+		RR42_RS27615	0.30	+0.1
1,560,097	-		RR42_RS27615	0.30	+0.1
1,560,097	-		RR42_RS27615	0.30	-1.3
1,560,097	-		RR42_RS27615	0.30	-0.4
1,560,147	+		RR42_RS27615	0.36	-0.0
1,560,147	+		RR42_RS27615	0.36	-0.1
1,560,147	+		RR42_RS27615	0.36	-1.2
1,560,148	-		RR42_RS27615	0.36	-0.3
1,560,393	+		RR42_RS27615	0.63	+0.1
1,560,496	-		RR42_RS27615	0.75	-0.1
1,560,687	+				-0.5
1,560,688	-				-0.1
1,560,944	+		RR42_RS27620	0.17	+0.6
1,560,950	+		RR42_RS27620	0.17	+0.9
1,560,950	+		RR42_RS27620	0.17	-0.4
1,560,950	+		RR42_RS27620	0.17	-0.1
1,561,050	-		RR42_RS27620	0.27	-0.5
1,561,050	-		RR42_RS27620	0.27	-0.1
1,561,130	+		RR42_RS27620	0.34	+2.1
1,561,130	+		RR42_RS27620	0.34	-0.6
1,561,140	-		RR42_RS27620	0.35	+0.1
1,561,140	-		RR42_RS27620	0.35	+0.4
1,561,386	-		RR42_RS27620	0.59	-1.5
1,561,644	-		RR42_RS27620	0.83	+0.9
1,561,644	-		RR42_RS27620	0.83	-0.6