Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26245

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26240 and RR42_RS26245 are separated by 106 nucleotidesRR42_RS26245 and RR42_RS26250 are separated by 26 nucleotides RR42_RS26240: RR42_RS26240 - 4-aminobutyrate aminotransferase, at 1,244,565 to 1,245,827 _RS26240 RR42_RS26245: RR42_RS26245 - thiamine pyrophosphate-binding protein, at 1,245,934 to 1,247,661 _RS26245 RR42_RS26250: RR42_RS26250 - allantoate amidohydrolase, at 1,247,688 to 1,248,935 _RS26250 Position (kb) 1245 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1 2at 1245.024 kb on + strand, within RR42_RS26240at 1245.024 kb on + strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240at 1245.025 kb on - strand, within RR42_RS26240at 1245.078 kb on + strand, within RR42_RS26240at 1245.330 kb on + strand, within RR42_RS26240at 1245.331 kb on - strand, within RR42_RS26240at 1245.331 kb on - strand, within RR42_RS26240at 1245.732 kb on + strandat 1245.733 kb on - strandat 1245.733 kb on - strandat 1246.054 kb on + strandat 1246.054 kb on + strandat 1246.054 kb on + strandat 1246.055 kb on - strandat 1246.055 kb on - strandat 1246.055 kb on - strandat 1246.136 kb on - strand, within RR42_RS26245at 1246.136 kb on - strand, within RR42_RS26245at 1246.136 kb on - strand, within RR42_RS26245at 1246.292 kb on - strand, within RR42_RS26245at 1246.760 kb on + strand, within RR42_RS26245at 1246.822 kb on + strand, within RR42_RS26245at 1246.822 kb on + strand, within RR42_RS26245at 1246.823 kb on - strand, within RR42_RS26245at 1246.823 kb on - strand, within RR42_RS26245at 1246.870 kb on + strand, within RR42_RS26245at 1247.116 kb on - strand, within RR42_RS26245at 1247.134 kb on + strand, within RR42_RS26245at 1247.134 kb on + strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.135 kb on - strand, within RR42_RS26245at 1247.143 kb on + strand, within RR42_RS26245at 1247.144 kb on - strand, within RR42_RS26245at 1247.144 kb on - strand, within RR42_RS26245at 1247.144 kb on - strand, within RR42_RS26245at 1247.144 kb on - strand, within RR42_RS26245at 1247.156 kb on - strand, within RR42_RS26245at 1247.156 kb on - strand, within RR42_RS26245at 1247.159 kb on - strand, within RR42_RS26245at 1247.272 kb on + strand, within RR42_RS26245at 1247.330 kb on - strand, within RR42_RS26245at 1247.578 kb on + strandat 1247.578 kb on + strandat 1247.579 kb on - strandat 1247.659 kb on + strandat 1247.660 kb on - strandat 1247.660 kb on - strandat 1247.877 kb on - strand, within RR42_RS26250at 1247.877 kb on - strand, within RR42_RS26250at 1247.976 kb on + strand, within RR42_RS26250at 1247.977 kb on - strand, within RR42_RS26250at 1247.977 kb on - strand, within RR42_RS26250at 1248.240 kb on + strand, within RR42_RS26250at 1248.254 kb on + strand, within RR42_RS26250at 1248.402 kb on + strand, within RR42_RS26250at 1248.403 kb on - strand, within RR42_RS26250

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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1,245,024 + RR42_RS26240 0.36 -1.1
1,245,024 + RR42_RS26240 0.36 +0.5
1,245,025 - RR42_RS26240 0.36 -1.8
1,245,025 - RR42_RS26240 0.36 +0.0
1,245,078 + RR42_RS26240 0.41 +0.5
1,245,330 + RR42_RS26240 0.61 +1.5
1,245,331 - RR42_RS26240 0.61 -0.0
1,245,331 - RR42_RS26240 0.61 -0.3
1,245,732 + -1.1
1,245,733 - +0.1
1,245,733 - +0.8
1,246,054 + +0.2
1,246,054 + +0.1
1,246,054 + +0.2
1,246,055 - -0.3
1,246,055 - +0.0
1,246,055 - +1.3
1,246,136 - RR42_RS26245 0.12 -1.7
1,246,136 - RR42_RS26245 0.12 +1.1
1,246,136 - RR42_RS26245 0.12 -1.3
1,246,292 - RR42_RS26245 0.21 -0.5
1,246,760 + RR42_RS26245 0.48 +1.3
1,246,822 + RR42_RS26245 0.51 -0.2
1,246,822 + RR42_RS26245 0.51 -2.3
1,246,823 - RR42_RS26245 0.51 +1.1
1,246,823 - RR42_RS26245 0.51 +0.6
1,246,870 + RR42_RS26245 0.54 -0.4
1,247,116 - RR42_RS26245 0.68 -0.7
1,247,134 + RR42_RS26245 0.69 +0.1
1,247,134 + RR42_RS26245 0.69 -0.0
1,247,135 - RR42_RS26245 0.70 +0.5
1,247,135 - RR42_RS26245 0.70 -0.0
1,247,135 - RR42_RS26245 0.70 +0.9
1,247,135 - RR42_RS26245 0.70 +0.6
1,247,135 - RR42_RS26245 0.70 +0.5
1,247,135 - RR42_RS26245 0.70 +1.9
1,247,143 + RR42_RS26245 0.70 -2.7
1,247,144 - RR42_RS26245 0.70 -1.3
1,247,144 - RR42_RS26245 0.70 +0.3
1,247,144 - RR42_RS26245 0.70 -0.7
1,247,144 - RR42_RS26245 0.70 +0.0
1,247,156 - RR42_RS26245 0.71 -0.6
1,247,156 - RR42_RS26245 0.71 -0.1
1,247,159 - RR42_RS26245 0.71 -0.9
1,247,272 + RR42_RS26245 0.77 +0.4
1,247,330 - RR42_RS26245 0.81 -0.6
1,247,578 + -0.1
1,247,578 + +0.2
1,247,579 - +0.7
1,247,659 + -1.1
1,247,660 - +0.1
1,247,660 - -1.5
1,247,877 - RR42_RS26250 0.15 +1.4
1,247,877 - RR42_RS26250 0.15 -0.4
1,247,976 + RR42_RS26250 0.23 -0.1
1,247,977 - RR42_RS26250 0.23 -0.4
1,247,977 - RR42_RS26250 0.23 +0.9
1,248,240 + RR42_RS26250 0.44 +0.3
1,248,254 + RR42_RS26250 0.45 +0.3
1,248,402 + RR42_RS26250 0.57 +0.4
1,248,403 - RR42_RS26250 0.57 -1.2

Or see this region's nucleotide sequence