Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25590

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,084,920	-		RR42_RS25585	0.59	-1.5
1,084,920	-		RR42_RS25585	0.59	-1.2
1,084,989	-		RR42_RS25585	0.65	-0.3
1,084,989	-		RR42_RS25585	0.65	+0.4
1,084,995	-		RR42_RS25585	0.66	-0.2
1,085,075	+		RR42_RS25585	0.73	+0.6
1,085,076	-		RR42_RS25585	0.73	+1.3
1,085,078	+		RR42_RS25585	0.73	+0.9
1,085,097	-		RR42_RS25585	0.75	-0.3
1,085,133	-		RR42_RS25585	0.78	+0.0
1,085,138	+		RR42_RS25585	0.78	+0.3
1,085,139	-		RR42_RS25585	0.78	-2.8
1,085,210	+		RR42_RS25585	0.84	+0.1
1,085,227	+		RR42_RS25585	0.86	-0.6
1,085,237	+		RR42_RS25585	0.87	-1.4
1,085,238	-		RR42_RS25585	0.87	-1.6
1,085,328	-				-0.7
1,085,447	-				-0.3
1,085,447	-				-0.9
1,085,612	-				+0.3
1,085,683	+				-0.2
1,085,723	-				-0.3
1,085,969	-		RR42_RS25590	0.10	+0.0
1,085,989	+		RR42_RS25590	0.13	-0.7
1,085,990	-		RR42_RS25590	0.13	-0.4
1,085,990	-		RR42_RS25590	0.13	-2.8
1,086,281	-		RR42_RS25590	0.52	-0.8
1,086,281	-		RR42_RS25590	0.52	+0.3
1,086,547	+		RR42_RS25590	0.88	-0.7
1,086,655	+				-1.1
1,086,800	-				-0.6
1,086,842	+		RR42_RS25595	0.14	+0.1
1,087,075	+		RR42_RS25595	0.41	+0.3
1,087,076	-		RR42_RS25595	0.41	+0.0
1,087,079	-		RR42_RS25595	0.42	-1.0
1,087,079	-		RR42_RS25595	0.42	+1.1
1,087,316	-		RR42_RS25595	0.69	+0.6
1,087,525	-				+0.4