Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25560

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,077,609	+				+0.4
1,077,609	+				-0.1
1,077,610	-				+1.3
1,077,698	+				+0.6
1,077,699	-				+0.1
1,077,748	-				+0.3
1,077,784	-				-0.4
1,077,784	-				-3.5
1,077,784	-				-1.5
1,077,856	+				+0.4
1,077,857	-				-0.8
1,077,919	+		RR42_RS25555	0.31	-0.3
1,077,949	+		RR42_RS25555	0.44	-1.4
1,077,949	+		RR42_RS25555	0.44	+0.7
1,077,950	-		RR42_RS25555	0.44	-0.1
1,078,048	+		RR42_RS25555	0.86	+0.0
1,078,049	-		RR42_RS25555	0.86	-0.4
1,078,049	-		RR42_RS25555	0.86	+0.3
1,078,049	-		RR42_RS25555	0.86	+0.2
1,078,156	+				+0.3
1,078,156	+				+0.6
1,078,156	+				-0.6
1,078,157	-				+1.4
1,078,158	+				-1.9
1,078,159	-				+0.8
1,078,217	+				+0.5
1,078,217	+				+0.0
1,078,238	-				-0.1
1,078,238	-				-0.0
1,078,254	+				-0.5
1,078,299	+				+1.4
1,078,311	+				+0.1
1,078,311	+				-1.6
1,078,311	+				-1.2
1,078,312	-				+0.9
1,078,312	-				+1.4
1,078,313	+				+3.1
1,078,383	+		RR42_RS25560	0.12	-0.3
1,078,416	+		RR42_RS25560	0.15	-2.4
1,078,532	+		RR42_RS25560	0.23	+1.2
1,078,608	+		RR42_RS25560	0.29	-0.1
1,078,795	+		RR42_RS25560	0.43	-0.1
1,078,796	-		RR42_RS25560	0.43	-1.0
1,078,810	-		RR42_RS25560	0.44	-1.4
1,079,027	+		RR42_RS25560	0.60	+1.1
1,079,028	-		RR42_RS25560	0.60	+0.4
1,079,092	-		RR42_RS25560	0.65	-0.3
1,079,223	+		RR42_RS25560	0.75	-0.5
1,079,223	+		RR42_RS25560	0.75	+1.4
1,079,224	-		RR42_RS25560	0.75	-2.4
1,079,224	-		RR42_RS25560	0.75	+1.2
1,079,359	+		RR42_RS25560	0.85	-0.7
1,079,388	+		RR42_RS25560	0.87	+0.9
1,079,389	-		RR42_RS25560	0.87	-0.0
1,079,395	+		RR42_RS25560	0.88	+0.4
1,079,772	+		RR42_RS25565	0.18	-1.1
1,079,772	+		RR42_RS25565	0.18	-0.4
1,079,773	-		RR42_RS25565	0.18	-0.1
1,079,879	-		RR42_RS25565	0.27	-1.8
1,080,139	-		RR42_RS25565	0.50	+0.2
1,080,139	-		RR42_RS25565	0.50	+0.3
1,080,139	-		RR42_RS25565	0.50	-0.5
1,080,142	-		RR42_RS25565	0.50	-0.8
1,080,142	-		RR42_RS25565	0.50	-0.3
1,080,211	-		RR42_RS25565	0.56	+0.4
1,080,213	+		RR42_RS25565	0.56	-0.1
1,080,214	-		RR42_RS25565	0.56	+0.9
1,080,300	+		RR42_RS25565	0.64	-2.1
1,080,301	-		RR42_RS25565	0.64	-0.2
1,080,303	+		RR42_RS25565	0.64	-1.0
1,080,408	+		RR42_RS25565	0.73	-0.6
1,080,410	+		RR42_RS25565	0.73	-0.2
1,080,457	-		RR42_RS25565	0.77	-0.1