Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25525

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,071,340	+				+0.5
1,071,340	+				+1.1
1,071,341	-				-0.2
1,071,344	+				+0.1
1,071,454	+				+0.2
1,071,455	-				-0.3
1,071,685	+		RR42_RS25520	0.33	-0.4
1,071,807	-		RR42_RS25520	0.46	+0.0
1,071,840	-		RR42_RS25520	0.50	+0.8
1,071,942	-		RR42_RS25520	0.60	-0.1
1,072,017	+		RR42_RS25520	0.68	+0.3
1,072,018	-		RR42_RS25520	0.69	+0.9
1,072,079	-		RR42_RS25520	0.75	+0.2
1,072,079	-		RR42_RS25520	0.75	+0.7
1,072,229	-				+0.9
1,072,365	+				+1.6
1,072,522	-		RR42_RS25525	0.22	+0.5
1,072,573	-		RR42_RS25525	0.27	-0.2
1,072,760	+		RR42_RS25525	0.46	-0.1
1,072,760	+		RR42_RS25525	0.46	-0.1
1,072,761	-		RR42_RS25525	0.47	+2.2
1,072,807	+		RR42_RS25525	0.51	-0.4
1,073,028	-		RR42_RS25525	0.74	-0.0
1,073,111	+		RR42_RS25525	0.82	+0.2
1,073,112	-		RR42_RS25525	0.83	+0.6
1,073,243	+				-2.5
1,073,243	+				-0.9
1,073,243	+				+0.5
1,073,244	-				+0.1
1,073,409	+				-0.6
1,073,439	+				-0.8
1,073,440	-				-2.0
1,073,440	-				+0.4
1,073,451	+				+0.1
1,073,578	+		RR42_RS25530	0.21	+1.9
1,073,578	+		RR42_RS25530	0.21	-1.4
1,073,578	+		RR42_RS25530	0.21	-1.8
1,073,579	-		RR42_RS25530	0.21	-2.2
1,073,693	+		RR42_RS25530	0.39	-0.1
1,073,693	+		RR42_RS25530	0.39	-0.3
1,073,746	+		RR42_RS25530	0.47	-0.3
1,073,782	+		RR42_RS25530	0.53	-1.4
1,073,782	+		RR42_RS25530	0.53	-0.8
1,073,783	-		RR42_RS25530	0.53	-2.1
1,073,783	-		RR42_RS25530	0.53	-1.4
1,073,783	-		RR42_RS25530	0.53	-1.9
1,073,783	-		RR42_RS25530	0.53	-1.8
1,073,784	+		RR42_RS25530	0.53	+0.9
1,073,854	+		RR42_RS25530	0.64	-1.2
1,073,855	-		RR42_RS25530	0.64	-3.0
1,073,933	+		RR42_RS25530	0.76	-2.0
1,073,933	+		RR42_RS25530	0.76	-0.4