Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25285

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
1,011,671	+				-0.5
1,011,672	-				-0.2
1,011,690	-				-0.4
1,011,690	-				+0.1
1,011,690	-				+1.2
1,011,883	+		RR42_RS25280	0.21	-2.0
1,011,884	-		RR42_RS25280	0.21	+0.0
1,011,928	+		RR42_RS25280	0.25	+0.4
1,012,048	+		RR42_RS25280	0.38	+1.8
1,012,462	-		RR42_RS25280	0.80	-0.5
1,012,643	+				+0.3
1,012,643	+				+0.6
1,012,977	-		RR42_RS25285	0.28	-1.0
1,013,012	+		RR42_RS25285	0.32	-0.1
1,013,012	+		RR42_RS25285	0.32	-1.4
1,013,013	-		RR42_RS25285	0.32	+0.0
1,013,013	-		RR42_RS25285	0.32	+1.7
1,013,045	+		RR42_RS25285	0.34	-2.1
1,013,046	-		RR42_RS25285	0.34	+1.2
1,013,046	-		RR42_RS25285	0.34	-2.4
1,013,099	+		RR42_RS25285	0.39	-0.3
1,013,100	-		RR42_RS25285	0.39	+0.1
1,013,213	-		RR42_RS25285	0.49	+0.1
1,013,289	-		RR42_RS25285	0.56	-0.4
1,013,346	+		RR42_RS25285	0.61	-1.0
1,013,346	+		RR42_RS25285	0.61	+0.6
1,013,349	-		RR42_RS25285	0.61	-0.4
1,013,349	-		RR42_RS25285	0.61	-3.4
1,013,349	-		RR42_RS25285	0.61	+1.1
1,013,465	+		RR42_RS25285	0.71	-0.2
1,013,465	+		RR42_RS25285	0.71	-0.2
1,013,466	-		RR42_RS25285	0.71	-0.5
1,013,585	+		RR42_RS25285	0.81	-0.8
1,013,585	+		RR42_RS25285	0.81	-0.2
1,013,586	-		RR42_RS25285	0.81	-1.9
1,013,784	+				+1.1
1,013,784	+				-1.2
1,013,818	-				+0.9
1,014,177	+		RR42_RS25290	0.33	-2.2
1,014,177	+		RR42_RS25290	0.33	+1.5
1,014,190	+		RR42_RS25290	0.34	-0.5
1,014,190	+		RR42_RS25290	0.34	+0.6
1,014,191	-		RR42_RS25290	0.35	+0.1
1,014,430	+		RR42_RS25290	0.58	-0.1
1,014,430	+		RR42_RS25290	0.58	+0.7
1,014,431	-		RR42_RS25290	0.58	-0.1
1,014,431	-		RR42_RS25290	0.58	-0.4
1,014,488	+		RR42_RS25290	0.64	+0.3
1,014,488	+		RR42_RS25290	0.64	-1.0
1,014,489	-		RR42_RS25290	0.64	-1.4
1,014,489	-		RR42_RS25290	0.64	-0.7