Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24870

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24865 and RR42_RS24870 are separated by 849 nucleotidesRR42_RS24870 and RR42_RS24875 are separated by 449 nucleotides RR42_RS24865: RR42_RS24865 - hypothetical protein, at 916,845 to 917,063 _RS24865 RR42_RS24870: RR42_RS24870 - membrane protein, at 917,913 to 919,076 _RS24870 RR42_RS24875: RR42_RS24875 - IclR family transcriptional regulator, at 919,526 to 920,332 _RS24875 Position (kb) 917 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1at 917.288 kb on - strandat 917.318 kb on + strandat 917.335 kb on - strandat 917.335 kb on - strandat 917.405 kb on + strandat 917.496 kb on - strandat 917.529 kb on + strandat 917.529 kb on + strandat 917.530 kb on - strandat 917.694 kb on - strandat 917.754 kb on + strandat 917.754 kb on + strandat 917.755 kb on - strandat 917.826 kb on + strandat 917.847 kb on + strandat 917.992 kb on - strandat 918.019 kb on - strandat 918.080 kb on + strand, within RR42_RS24870at 918.081 kb on - strand, within RR42_RS24870at 918.087 kb on + strand, within RR42_RS24870at 918.129 kb on - strand, within RR42_RS24870at 918.298 kb on - strand, within RR42_RS24870at 918.355 kb on - strand, within RR42_RS24870at 918.402 kb on - strand, within RR42_RS24870at 918.402 kb on - strand, within RR42_RS24870at 918.402 kb on - strand, within RR42_RS24870at 918.411 kb on + strand, within RR42_RS24870at 918.411 kb on + strand, within RR42_RS24870at 918.411 kb on + strand, within RR42_RS24870at 918.411 kb on + strand, within RR42_RS24870at 918.412 kb on - strand, within RR42_RS24870at 918.412 kb on - strand, within RR42_RS24870at 918.553 kb on - strand, within RR42_RS24870at 918.570 kb on + strand, within RR42_RS24870at 918.570 kb on + strand, within RR42_RS24870at 918.571 kb on - strand, within RR42_RS24870at 918.571 kb on - strand, within RR42_RS24870at 918.604 kb on - strand, within RR42_RS24870at 918.672 kb on + strand, within RR42_RS24870at 918.672 kb on + strand, within RR42_RS24870at 918.673 kb on - strand, within RR42_RS24870at 918.673 kb on - strand, within RR42_RS24870at 918.759 kb on + strand, within RR42_RS24870at 918.763 kb on - strand, within RR42_RS24870at 918.851 kb on + strand, within RR42_RS24870at 918.894 kb on + strand, within RR42_RS24870at 918.894 kb on + strand, within RR42_RS24870at 918.922 kb on - strand, within RR42_RS24870at 918.922 kb on - strand, within RR42_RS24870at 919.011 kb on + strandat 919.011 kb on + strandat 919.016 kb on - strandat 919.074 kb on + strandat 919.075 kb on - strandat 919.088 kb on - strandat 919.140 kb on + strandat 919.248 kb on + strandat 919.273 kb on - strandat 919.520 kb on + strandat 919.521 kb on - strandat 919.757 kb on + strand, within RR42_RS24875at 919.758 kb on - strand, within RR42_RS24875at 919.859 kb on - strand, within RR42_RS24875at 919.864 kb on + strand, within RR42_RS24875at 919.868 kb on + strand, within RR42_RS24875at 919.868 kb on + strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.869 kb on - strand, within RR42_RS24875at 919.924 kb on - strand, within RR42_RS24875at 919.936 kb on - strand, within RR42_RS24875at 920.036 kb on + strand, within RR42_RS24875at 920.036 kb on + strand, within RR42_RS24875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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917,288 - +0.1
917,318 + -0.1
917,335 - -1.6
917,335 - +0.6
917,405 + -0.4
917,496 - -1.0
917,529 + +0.5
917,529 + +0.2
917,530 - -0.0
917,694 - -0.3
917,754 + +0.8
917,754 + +0.5
917,755 - +0.5
917,826 + -0.2
917,847 + +0.6
917,992 - +0.7
918,019 - +0.6
918,080 + RR42_RS24870 0.14 +0.6
918,081 - RR42_RS24870 0.14 -0.4
918,087 + RR42_RS24870 0.15 -1.0
918,129 - RR42_RS24870 0.19 -1.1
918,298 - RR42_RS24870 0.33 -0.7
918,355 - RR42_RS24870 0.38 +0.5
918,402 - RR42_RS24870 0.42 -1.4
918,402 - RR42_RS24870 0.42 -1.8
918,402 - RR42_RS24870 0.42 -1.2
918,411 + RR42_RS24870 0.43 -0.4
918,411 + RR42_RS24870 0.43 -1.2
918,411 + RR42_RS24870 0.43 +0.5
918,411 + RR42_RS24870 0.43 +0.1
918,412 - RR42_RS24870 0.43 -0.1
918,412 - RR42_RS24870 0.43 +0.0
918,553 - RR42_RS24870 0.55 +0.5
918,570 + RR42_RS24870 0.56 -1.4
918,570 + RR42_RS24870 0.56 -0.7
918,571 - RR42_RS24870 0.57 -0.6
918,571 - RR42_RS24870 0.57 +1.0
918,604 - RR42_RS24870 0.59 -0.7
918,672 + RR42_RS24870 0.65 +0.8
918,672 + RR42_RS24870 0.65 -0.3
918,673 - RR42_RS24870 0.65 -0.8
918,673 - RR42_RS24870 0.65 -0.2
918,759 + RR42_RS24870 0.73 -0.6
918,763 - RR42_RS24870 0.73 -0.4
918,851 + RR42_RS24870 0.81 +1.2
918,894 + RR42_RS24870 0.84 +0.2
918,894 + RR42_RS24870 0.84 -0.3
918,922 - RR42_RS24870 0.87 +1.1
918,922 - RR42_RS24870 0.87 -0.4
919,011 + -0.5
919,011 + -0.5
919,016 - -2.8
919,074 + -0.5
919,075 - +0.6
919,088 - -0.6
919,140 + +0.7
919,248 + -0.3
919,273 - -0.4
919,520 + +0.5
919,521 - -0.3
919,757 + RR42_RS24875 0.29 -0.6
919,758 - RR42_RS24875 0.29 -0.0
919,859 - RR42_RS24875 0.41 -1.4
919,864 + RR42_RS24875 0.42 +0.7
919,868 + RR42_RS24875 0.42 +1.0
919,868 + RR42_RS24875 0.42 +0.2
919,869 - RR42_RS24875 0.43 +1.2
919,869 - RR42_RS24875 0.43 -0.4
919,869 - RR42_RS24875 0.43 +1.0
919,924 - RR42_RS24875 0.49 +0.4
919,936 - RR42_RS24875 0.51 +0.2
920,036 + RR42_RS24875 0.63 -1.4
920,036 + RR42_RS24875 0.63 -0.3

Or see this region's nucleotide sequence