Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
Position (kb) 873
874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.088 kb on + strand, within RR42_RS24665 at 872.099 kb on + strand, within RR42_RS24665 at 872.990 kb on + strand at 872.990 kb on + strand at 872.991 kb on - strand at 873.061 kb on + strand at 873.223 kb on + strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.323 kb on + strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.475 kb on + strand, within RR42_RS24670 at 873.555 kb on + strand, within RR42_RS24670 at 873.556 kb on - strand, within RR42_RS24670 at 873.605 kb on + strand at 873.606 kb on - strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.851 kb on - strand at 873.946 kb on + strand at 874.256 kb on + strand, within RR42_RS24675 at 874.548 kb on + strand, within RR42_RS24675 at 874.549 kb on - strand, within RR42_RS24675 at 874.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 872,088 + RR42_RS24665 0.19 -0.8 872,099 + RR42_RS24665 0.20 -0.0 872,990 + +0.5 872,990 + +2.0 872,991 - -0.4 873,061 + +0.1 873,223 + RR42_RS24670 0.29 +0.3 873,224 - RR42_RS24670 0.29 -0.5 873,224 - RR42_RS24670 0.29 -1.1 873,224 - RR42_RS24670 0.29 -0.3 873,224 - RR42_RS24670 0.29 +0.6 873,290 + RR42_RS24670 0.41 -0.6 873,290 + RR42_RS24670 0.41 -0.3 873,291 - RR42_RS24670 0.41 -0.8 873,291 - RR42_RS24670 0.41 +0.6 873,291 - RR42_RS24670 0.41 -0.0 873,323 + RR42_RS24670 0.47 -0.6 873,324 - RR42_RS24670 0.47 -0.2 873,324 - RR42_RS24670 0.47 -0.0 873,324 - RR42_RS24670 0.47 -0.8 873,475 + RR42_RS24670 0.74 -1.3 873,555 + RR42_RS24670 0.89 -0.4 873,556 - RR42_RS24670 0.89 +0.0 873,605 + -0.4 873,606 - -1.4 873,692 + +0.5 873,692 + +0.6 873,692 + -0.4 873,692 + -1.5 873,701 + -0.0 873,702 - +1.0 873,702 - -0.4 873,702 - -0.9 873,702 - -0.6 873,702 - -1.6 873,702 - +0.1 873,851 - -0.7 873,946 + +0.4 874,256 + RR42_RS24675 0.27 -1.4 874,548 + RR42_RS24675 0.52 +0.4 874,549 - RR42_RS24675 0.52 -2.7 874,549 - +1.0
Or see this region's nucleotide sequence