Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
Position (kb) 871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 871.049 kb on + strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.050 kb on - strand, within RR42_RS24660 at 871.091 kb on - strand, within RR42_RS24660 at 871.252 kb on + strand, within RR42_RS24660 at 871.253 kb on - strand, within RR42_RS24660 at 871.331 kb on + strand, within RR42_RS24660 at 871.334 kb on + strand, within RR42_RS24660 at 871.375 kb on + strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.391 kb on + strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.697 kb on - strand at 871.795 kb on + strand at 871.854 kb on + strand at 871.904 kb on + strand at 871.905 kb on - strand at 872.088 kb on + strand, within RR42_RS24665 at 872.099 kb on + strand, within RR42_RS24665 at 872.990 kb on + strand at 872.990 kb on + strand at 872.991 kb on - strand at 873.061 kb on + strand at 873.223 kb on + strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.323 kb on + strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.475 kb on + strand, within RR42_RS24670 at 873.555 kb on + strand, within RR42_RS24670 at 873.556 kb on - strand, within RR42_RS24670 at 873.605 kb on + strand at 873.606 kb on - strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.851 kb on - strand at 873.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 871,049 + RR42_RS24660 0.73 -0.8 871,049 + RR42_RS24660 0.73 -0.8 871,050 - RR42_RS24660 0.73 +0.8 871,091 - RR42_RS24660 0.74 -0.7 871,252 + RR42_RS24660 0.80 +0.4 871,253 - RR42_RS24660 0.80 -0.1 871,331 + RR42_RS24660 0.82 -1.0 871,334 + RR42_RS24660 0.82 -1.1 871,375 + RR42_RS24660 0.84 -1.3 871,376 - RR42_RS24660 0.84 +0.5 871,376 - RR42_RS24660 0.84 -3.3 871,391 + RR42_RS24660 0.84 +1.0 871,392 - RR42_RS24660 0.84 +0.9 871,392 - RR42_RS24660 0.84 +1.8 871,392 - RR42_RS24660 0.84 +0.9 871,697 - +1.0 871,795 + +0.2 871,854 + -0.1 871,904 + +0.2 871,905 - -1.4 872,088 + RR42_RS24665 0.19 -0.8 872,099 + RR42_RS24665 0.20 -0.0 872,990 + +0.5 872,990 + +2.0 872,991 - -0.4 873,061 + +0.1 873,223 + RR42_RS24670 0.29 +0.3 873,224 - RR42_RS24670 0.29 -0.5 873,224 - RR42_RS24670 0.29 -1.1 873,224 - RR42_RS24670 0.29 -0.3 873,224 - RR42_RS24670 0.29 +0.6 873,290 + RR42_RS24670 0.41 -0.6 873,290 + RR42_RS24670 0.41 -0.3 873,291 - RR42_RS24670 0.41 -0.8 873,291 - RR42_RS24670 0.41 +0.6 873,291 - RR42_RS24670 0.41 -0.0 873,323 + RR42_RS24670 0.47 -0.6 873,324 - RR42_RS24670 0.47 -0.2 873,324 - RR42_RS24670 0.47 -0.0 873,324 - RR42_RS24670 0.47 -0.8 873,475 + RR42_RS24670 0.74 -1.3 873,555 + RR42_RS24670 0.89 -0.4 873,556 - RR42_RS24670 0.89 +0.0 873,605 + -0.4 873,606 - -1.4 873,692 + +0.5 873,692 + +0.6 873,692 + -0.4 873,692 + -1.5 873,701 + -0.0 873,702 - +1.0 873,702 - -0.4 873,702 - -0.9 873,702 - -0.6 873,702 - -1.6 873,702 - +0.1 873,851 - -0.7 873,946 + +0.4
Or see this region's nucleotide sequence