Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24335 and RR42_RS24340 are separated by 255 nucleotides RR42_RS24340 and RR42_RS24345 are separated by 137 nucleotides
RR42_RS24335: RR42_RS24335 - L-aspartate oxidase, at 787,315 to 788,925
_RS24335
RR42_RS24340: RR42_RS24340 - hypothetical protein, at 789,181 to 790,731
_RS24340
RR42_RS24345: RR42_RS24345 - membrane protein, at 790,869 to 791,981
_RS24345
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 788.196 kb on - strand, within RR42_RS24335 at 788.196 kb on - strand, within RR42_RS24335 at 788.344 kb on - strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.409 kb on + strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.410 kb on - strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.449 kb on + strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.450 kb on - strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.590 kb on + strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.591 kb on - strand, within RR42_RS24335 at 788.641 kb on + strand, within RR42_RS24335 at 788.642 kb on - strand, within RR42_RS24335 at 788.676 kb on + strand, within RR42_RS24335 at 788.677 kb on - strand, within RR42_RS24335 at 788.678 kb on + strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.679 kb on - strand, within RR42_RS24335 at 788.733 kb on + strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.734 kb on - strand, within RR42_RS24335 at 788.809 kb on + strand at 788.833 kb on + strand at 788.833 kb on + strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.834 kb on - strand at 788.841 kb on - strand at 788.955 kb on + strand at 788.975 kb on - strand at 789.032 kb on + strand at 789.032 kb on + strand at 789.052 kb on - strand at 789.106 kb on + strand at 789.186 kb on - strand at 789.186 kb on - strand at 789.265 kb on + strand at 789.266 kb on - strand at 789.275 kb on + strand at 789.275 kb on + strand at 789.315 kb on + strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.316 kb on - strand at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.377 kb on + strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.378 kb on - strand, within RR42_RS24340 at 789.381 kb on + strand, within RR42_RS24340 at 789.395 kb on + strand, within RR42_RS24340 at 789.396 kb on - strand, within RR42_RS24340 at 789.543 kb on + strand, within RR42_RS24340 at 789.561 kb on + strand, within RR42_RS24340 at 789.567 kb on + strand, within RR42_RS24340 at 789.584 kb on - strand, within RR42_RS24340 at 789.663 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.665 kb on + strand, within RR42_RS24340 at 789.666 kb on - strand, within RR42_RS24340 at 789.736 kb on - strand, within RR42_RS24340 at 789.745 kb on + strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.746 kb on - strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.758 kb on + strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.759 kb on - strand, within RR42_RS24340 at 789.768 kb on + strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.769 kb on - strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.779 kb on + strand, within RR42_RS24340 at 789.780 kb on - strand, within RR42_RS24340 at 789.855 kb on - strand, within RR42_RS24340 at 789.860 kb on + strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.861 kb on - strand, within RR42_RS24340 at 789.891 kb on + strand, within RR42_RS24340 at 789.892 kb on - strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.907 kb on + strand, within RR42_RS24340 at 789.908 kb on - strand, within RR42_RS24340 at 789.915 kb on + strand, within RR42_RS24340 at 789.946 kb on + strand, within RR42_RS24340 at 789.947 kb on - strand, within RR42_RS24340 at 789.947 kb on - strand, within RR42_RS24340 at 789.985 kb on + strand, within RR42_RS24340 at 789.986 kb on - strand, within RR42_RS24340 at 790.000 kb on + strand, within RR42_RS24340 at 790.023 kb on + strand, within RR42_RS24340 at 790.023 kb on + strand, within RR42_RS24340 at 790.029 kb on + strand, within RR42_RS24340 at 790.029 kb on + strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.030 kb on - strand, within RR42_RS24340 at 790.084 kb on + strand, within RR42_RS24340 at 790.085 kb on - strand, within RR42_RS24340 at 790.123 kb on + strand, within RR42_RS24340 at 790.124 kb on - strand, within RR42_RS24340 at 790.124 kb on - strand, within RR42_RS24340 at 790.136 kb on - strand, within RR42_RS24340 at 790.235 kb on + strand, within RR42_RS24340 at 790.235 kb on + strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.236 kb on - strand, within RR42_RS24340 at 790.356 kb on + strand, within RR42_RS24340 at 790.356 kb on + strand, within RR42_RS24340 at 790.419 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.452 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.467 kb on - strand, within RR42_RS24340 at 790.497 kb on - strand, within RR42_RS24340 at 790.497 kb on - strand, within RR42_RS24340 at 790.671 kb on + strand at 790.725 kb on + strand at 790.740 kb on + strand at 790.754 kb on + strand at 790.754 kb on + strand at 790.754 kb on + strand at 790.755 kb on - strand at 790.755 kb on - strand at 790.829 kb on + strand at 790.837 kb on - strand at 790.842 kb on + strand at 790.866 kb on + strand at 790.934 kb on + strand at 790.935 kb on - strand at 790.935 kb on - strand at 790.935 kb on - strand at 790.937 kb on + strand at 790.940 kb on + strand at 790.941 kb on - strand at 790.941 kb on - strand at 790.948 kb on - strand at 790.948 kb on - strand at 790.974 kb on + strand at 790.975 kb on - strand at 791.128 kb on + strand, within RR42_RS24345 at 791.128 kb on + strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.129 kb on - strand, within RR42_RS24345 at 791.156 kb on - strand, within RR42_RS24345 at 791.210 kb on - strand, within RR42_RS24345 at 791.210 kb on - strand, within RR42_RS24345 at 791.253 kb on + strand, within RR42_RS24345 at 791.310 kb on + strand, within RR42_RS24345 at 791.311 kb on - strand, within RR42_RS24345 at 791.330 kb on - strand, within RR42_RS24345 at 791.339 kb on - strand, within RR42_RS24345 at 791.339 kb on - strand, within RR42_RS24345 at 791.358 kb on - strand, within RR42_RS24345 at 791.465 kb on + strand, within RR42_RS24345 at 791.466 kb on - strand, within RR42_RS24345 at 791.466 kb on - strand, within RR42_RS24345 at 791.468 kb on + strand, within RR42_RS24345 at 791.469 kb on - strand, within RR42_RS24345 at 791.472 kb on + strand, within RR42_RS24345 at 791.473 kb on - strand, within RR42_RS24345 at 791.473 kb on - strand, within RR42_RS24345 at 791.485 kb on + strand, within RR42_RS24345 at 791.521 kb on + strand, within RR42_RS24345 at 791.522 kb on - strand, within RR42_RS24345 at 791.522 kb on - strand, within RR42_RS24345 at 791.535 kb on - strand, within RR42_RS24345 at 791.567 kb on + strand, within RR42_RS24345 at 791.594 kb on + strand, within RR42_RS24345 at 791.595 kb on - strand, within RR42_RS24345 at 791.598 kb on + strand, within RR42_RS24345 at 791.598 kb on + strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.599 kb on - strand, within RR42_RS24345 at 791.667 kb on - strand, within RR42_RS24345 at 791.671 kb on + strand, within RR42_RS24345 at 791.671 kb on + strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.672 kb on - strand, within RR42_RS24345 at 791.686 kb on - strand, within RR42_RS24345 at 791.686 kb on - strand, within RR42_RS24345 at 791.707 kb on - strand, within RR42_RS24345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 788,196 - RR42_RS24335 0.55 -1.1 788,196 - RR42_RS24335 0.55 -1.6 788,344 - RR42_RS24335 0.64 +0.4 788,409 + RR42_RS24335 0.68 -2.1 788,409 + RR42_RS24335 0.68 -0.6 788,410 - RR42_RS24335 0.68 +2.0 788,410 - RR42_RS24335 0.68 -0.8 788,449 + RR42_RS24335 0.70 +1.2 788,449 + RR42_RS24335 0.70 -0.1 788,450 - RR42_RS24335 0.70 +1.0 788,450 - RR42_RS24335 0.70 -2.4 788,450 - RR42_RS24335 0.70 +0.5 788,590 + RR42_RS24335 0.79 +0.9 788,590 + RR42_RS24335 0.79 +1.6 788,590 + RR42_RS24335 0.79 +0.6 788,591 - RR42_RS24335 0.79 -3.6 788,591 - RR42_RS24335 0.79 -0.4 788,641 + RR42_RS24335 0.82 -0.1 788,642 - RR42_RS24335 0.82 +1.2 788,676 + RR42_RS24335 0.84 +1.0 788,677 - RR42_RS24335 0.85 -0.1 788,678 + RR42_RS24335 0.85 -1.0 788,679 - RR42_RS24335 0.85 +0.2 788,679 - RR42_RS24335 0.85 +0.7 788,679 - RR42_RS24335 0.85 -2.4 788,679 - RR42_RS24335 0.85 +0.3 788,733 + RR42_RS24335 0.88 +1.6 788,734 - RR42_RS24335 0.88 +1.3 788,734 - RR42_RS24335 0.88 -1.1 788,809 + +0.1 788,833 + -0.2 788,833 + +1.4 788,834 - -0.5 788,834 - -0.9 788,834 - +2.5 788,834 - +0.7 788,841 - +0.1 788,955 + +0.3 788,975 - -1.0 789,032 + +0.5 789,032 + +0.2 789,052 - -0.5 789,106 + +1.0 789,186 - +0.2 789,186 - +0.8 789,265 + +1.0 789,266 - -1.0 789,275 + -1.0 789,275 + +0.5 789,315 + +0.8 789,316 - -0.5 789,316 - -0.8 789,316 - -0.3 789,316 - +0.0 789,377 + RR42_RS24340 0.13 -1.0 789,377 + RR42_RS24340 0.13 +0.9 789,377 + RR42_RS24340 0.13 -0.1 789,377 + RR42_RS24340 0.13 -0.2 789,378 - RR42_RS24340 0.13 +0.5 789,378 - RR42_RS24340 0.13 -0.5 789,378 - RR42_RS24340 0.13 -2.6 789,378 - RR42_RS24340 0.13 -0.1 789,381 + RR42_RS24340 0.13 +1.0 789,395 + RR42_RS24340 0.14 +1.7 789,396 - RR42_RS24340 0.14 -0.6 789,543 + RR42_RS24340 0.23 -0.3 789,561 + RR42_RS24340 0.25 +1.1 789,567 + RR42_RS24340 0.25 -0.3 789,584 - RR42_RS24340 0.26 -0.1 789,663 + RR42_RS24340 0.31 -0.2 789,665 + RR42_RS24340 0.31 +0.2 789,665 + RR42_RS24340 0.31 -1.7 789,666 - RR42_RS24340 0.31 -0.8 789,736 - RR42_RS24340 0.36 +1.3 789,745 + RR42_RS24340 0.36 +0.9 789,746 - RR42_RS24340 0.36 -0.4 789,746 - RR42_RS24340 0.36 -0.2 789,758 + RR42_RS24340 0.37 +0.2 789,758 + RR42_RS24340 0.37 -0.4 789,759 - RR42_RS24340 0.37 +0.3 789,759 - RR42_RS24340 0.37 -1.7 789,759 - RR42_RS24340 0.37 +0.2 789,759 - RR42_RS24340 0.37 -0.3 789,768 + RR42_RS24340 0.38 -1.8 789,769 - RR42_RS24340 0.38 -0.4 789,769 - RR42_RS24340 0.38 -0.8 789,779 + RR42_RS24340 0.39 -1.3 789,779 + RR42_RS24340 0.39 +1.1 789,780 - RR42_RS24340 0.39 +0.2 789,855 - RR42_RS24340 0.43 +1.4 789,860 + RR42_RS24340 0.44 +0.1 789,861 - RR42_RS24340 0.44 -0.4 789,861 - RR42_RS24340 0.44 +0.0 789,861 - RR42_RS24340 0.44 -0.4 789,891 + RR42_RS24340 0.46 +1.2 789,892 - RR42_RS24340 0.46 +0.9 789,907 + RR42_RS24340 0.47 -3.4 789,907 + RR42_RS24340 0.47 -2.8 789,908 - RR42_RS24340 0.47 +0.4 789,915 + RR42_RS24340 0.47 +0.0 789,946 + RR42_RS24340 0.49 +0.3 789,947 - RR42_RS24340 0.49 +0.8 789,947 - RR42_RS24340 0.49 -0.6 789,985 + RR42_RS24340 0.52 -1.3 789,986 - RR42_RS24340 0.52 -1.2 790,000 + RR42_RS24340 0.53 +0.4 790,023 + RR42_RS24340 0.54 +0.4 790,023 + RR42_RS24340 0.54 +1.8 790,029 + RR42_RS24340 0.55 +0.0 790,029 + RR42_RS24340 0.55 -0.6 790,030 - RR42_RS24340 0.55 +1.0 790,030 - RR42_RS24340 0.55 -0.9 790,030 - RR42_RS24340 0.55 -1.0 790,084 + RR42_RS24340 0.58 -0.2 790,085 - RR42_RS24340 0.58 -0.5 790,123 + RR42_RS24340 0.61 -0.3 790,124 - RR42_RS24340 0.61 -1.7 790,124 - RR42_RS24340 0.61 +1.5 790,136 - RR42_RS24340 0.62 -2.1 790,235 + RR42_RS24340 0.68 -0.4 790,235 + RR42_RS24340 0.68 -0.7 790,236 - RR42_RS24340 0.68 -0.3 790,236 - RR42_RS24340 0.68 -1.1 790,236 - RR42_RS24340 0.68 -2.1 790,236 - RR42_RS24340 0.68 -1.3 790,236 - RR42_RS24340 0.68 -0.5 790,236 - RR42_RS24340 0.68 +1.1 790,236 - RR42_RS24340 0.68 -1.1 790,356 + RR42_RS24340 0.76 -1.7 790,356 + RR42_RS24340 0.76 +2.9 790,419 - RR42_RS24340 0.80 +0.5 790,452 - RR42_RS24340 0.82 -0.8 790,452 - RR42_RS24340 0.82 -2.3 790,452 - RR42_RS24340 0.82 -0.3 790,467 - RR42_RS24340 0.83 -0.1 790,467 - RR42_RS24340 0.83 -0.9 790,467 - RR42_RS24340 0.83 +1.0 790,497 - RR42_RS24340 0.85 +0.0 790,497 - RR42_RS24340 0.85 +0.3 790,671 + +0.1 790,725 + +0.7 790,740 + +0.2 790,754 + +0.2 790,754 + +0.5 790,754 + +0.4 790,755 - +0.7 790,755 - +0.6 790,829 + -1.0 790,837 - -0.4 790,842 + +0.2 790,866 + +0.2 790,934 + -1.3 790,935 - +2.6 790,935 - +1.0 790,935 - +0.3 790,937 + +0.7 790,940 + +0.4 790,941 - +0.6 790,941 - -1.7 790,948 - +1.0 790,948 - +1.1 790,974 + +1.6 790,975 - +1.2 791,128 + RR42_RS24345 0.23 +0.2 791,128 + RR42_RS24345 0.23 -2.0 791,129 - RR42_RS24345 0.23 +1.2 791,129 - RR42_RS24345 0.23 +2.0 791,129 - RR42_RS24345 0.23 +0.2 791,129 - RR42_RS24345 0.23 +0.0 791,129 - RR42_RS24345 0.23 +0.0 791,129 - RR42_RS24345 0.23 -0.9 791,156 - RR42_RS24345 0.26 -0.4 791,210 - RR42_RS24345 0.31 +0.3 791,210 - RR42_RS24345 0.31 +0.9 791,253 + RR42_RS24345 0.35 -0.1 791,310 + RR42_RS24345 0.40 +0.2 791,311 - RR42_RS24345 0.40 -2.0 791,330 - RR42_RS24345 0.41 +0.4 791,339 - RR42_RS24345 0.42 -0.6 791,339 - RR42_RS24345 0.42 +0.3 791,358 - RR42_RS24345 0.44 -0.1 791,465 + RR42_RS24345 0.54 +0.3 791,466 - RR42_RS24345 0.54 -0.3 791,466 - RR42_RS24345 0.54 -0.1 791,468 + RR42_RS24345 0.54 -0.1 791,469 - RR42_RS24345 0.54 -0.7 791,472 + RR42_RS24345 0.54 -1.1 791,473 - RR42_RS24345 0.54 +0.9 791,473 - RR42_RS24345 0.54 -0.1 791,485 + RR42_RS24345 0.55 +0.2 791,521 + RR42_RS24345 0.59 +0.2 791,522 - RR42_RS24345 0.59 +0.9 791,522 - RR42_RS24345 0.59 -1.6 791,535 - RR42_RS24345 0.60 +0.2 791,567 + RR42_RS24345 0.63 -1.3 791,594 + RR42_RS24345 0.65 -2.1 791,595 - RR42_RS24345 0.65 -1.8 791,598 + RR42_RS24345 0.65 +0.3 791,598 + RR42_RS24345 0.65 -0.2 791,599 - RR42_RS24345 0.66 -0.7 791,599 - RR42_RS24345 0.66 +0.3 791,599 - RR42_RS24345 0.66 +0.1 791,667 - RR42_RS24345 0.72 +0.7 791,671 + RR42_RS24345 0.72 +0.5 791,671 + RR42_RS24345 0.72 -1.3 791,672 - RR42_RS24345 0.72 -1.1 791,672 - RR42_RS24345 0.72 -1.6 791,672 - RR42_RS24345 0.72 -0.3 791,686 - RR42_RS24345 0.73 +1.6 791,686 - RR42_RS24345 0.73 +0.8 791,707 - RR42_RS24345 0.75 -1.7
Or see this region's nucleotide sequence