Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23400 and RR42_RS23405 are separated by 264 nucleotides RR42_RS23405 and RR42_RS23410 are separated by 236 nucleotides
RR42_RS23400: RR42_RS23400 - ABC transporter substrate-binding protein, at 577,365 to 578,354
_RS23400
RR42_RS23405: RR42_RS23405 - hypothetical protein, at 578,619 to 579,512
_RS23405
RR42_RS23410: RR42_RS23410 - hypothetical protein, at 579,749 to 580,648
_RS23410
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.645 kb on - strand, within RR42_RS23400 at 577.645 kb on - strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.646 kb on + strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.647 kb on - strand, within RR42_RS23400 at 577.677 kb on + strand, within RR42_RS23400 at 577.707 kb on + strand, within RR42_RS23400 at 577.708 kb on - strand, within RR42_RS23400 at 577.725 kb on + strand, within RR42_RS23400 at 577.725 kb on + strand, within RR42_RS23400 at 577.726 kb on - strand, within RR42_RS23400 at 577.776 kb on - strand, within RR42_RS23400 at 577.839 kb on + strand, within RR42_RS23400 at 577.839 kb on + strand, within RR42_RS23400 at 577.840 kb on - strand, within RR42_RS23400 at 577.932 kb on + strand, within RR42_RS23400 at 577.933 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 577.979 kb on - strand, within RR42_RS23400 at 578.008 kb on + strand, within RR42_RS23400 at 578.009 kb on - strand, within RR42_RS23400 at 578.010 kb on + strand, within RR42_RS23400 at 578.010 kb on + strand, within RR42_RS23400 at 578.011 kb on - strand, within RR42_RS23400 at 578.011 kb on - strand, within RR42_RS23400 at 578.157 kb on - strand, within RR42_RS23400 at 578.244 kb on - strand, within RR42_RS23400 at 578.613 kb on + strand at 578.614 kb on - strand at 578.661 kb on + strand at 578.750 kb on - strand, within RR42_RS23405 at 578.837 kb on + strand, within RR42_RS23405 at 578.838 kb on - strand, within RR42_RS23405 at 578.876 kb on - strand, within RR42_RS23405 at 578.924 kb on + strand, within RR42_RS23405 at 579.201 kb on + strand, within RR42_RS23405 at 579.202 kb on - strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.327 kb on + strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.328 kb on - strand, within RR42_RS23405 at 579.700 kb on + strand at 579.700 kb on + strand at 579.751 kb on - strand at 579.756 kb on - strand at 579.870 kb on - strand, within RR42_RS23410 at 579.947 kb on + strand, within RR42_RS23410 at 579.981 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.041 kb on + strand, within RR42_RS23410 at 580.042 kb on - strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.202 kb on + strand, within RR42_RS23410 at 580.203 kb on - strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.338 kb on + strand, within RR42_RS23410 at 580.486 kb on + strand, within RR42_RS23410
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 577,645 - RR42_RS23400 0.28 +0.4 577,645 - RR42_RS23400 0.28 -0.9 577,646 + RR42_RS23400 0.28 -0.7 577,646 + RR42_RS23400 0.28 +0.5 577,646 + RR42_RS23400 0.28 -0.2 577,647 - RR42_RS23400 0.28 +0.5 577,647 - RR42_RS23400 0.28 +0.1 577,647 - RR42_RS23400 0.28 -0.9 577,677 + RR42_RS23400 0.32 -0.1 577,707 + RR42_RS23400 0.35 +0.4 577,708 - RR42_RS23400 0.35 -0.9 577,725 + RR42_RS23400 0.36 -0.3 577,725 + RR42_RS23400 0.36 -0.1 577,726 - RR42_RS23400 0.36 +0.4 577,776 - RR42_RS23400 0.42 +0.1 577,839 + RR42_RS23400 0.48 +1.6 577,839 + RR42_RS23400 0.48 +0.1 577,840 - RR42_RS23400 0.48 +0.4 577,932 + RR42_RS23400 0.57 -1.7 577,933 - RR42_RS23400 0.57 -0.5 577,979 - RR42_RS23400 0.62 +1.0 577,979 - RR42_RS23400 0.62 +1.9 577,979 - RR42_RS23400 0.62 +0.7 578,008 + RR42_RS23400 0.65 +1.4 578,009 - RR42_RS23400 0.65 +1.0 578,010 + RR42_RS23400 0.65 -1.7 578,010 + RR42_RS23400 0.65 -0.5 578,011 - RR42_RS23400 0.65 -1.1 578,011 - RR42_RS23400 0.65 -0.2 578,157 - RR42_RS23400 0.80 -0.0 578,244 - RR42_RS23400 0.89 -1.6 578,613 + +0.4 578,614 - -0.9 578,661 + -0.0 578,750 - RR42_RS23405 0.15 +0.3 578,837 + RR42_RS23405 0.24 +0.5 578,838 - RR42_RS23405 0.24 +1.0 578,876 - RR42_RS23405 0.29 -1.3 578,924 + RR42_RS23405 0.34 +2.0 579,201 + RR42_RS23405 0.65 -0.5 579,202 - RR42_RS23405 0.65 +1.4 579,327 + RR42_RS23405 0.79 -0.3 579,327 + RR42_RS23405 0.79 -0.4 579,328 - RR42_RS23405 0.79 +0.4 579,328 - RR42_RS23405 0.79 +0.4 579,700 + +0.0 579,700 + +0.3 579,751 - +0.8 579,756 - -0.4 579,870 - RR42_RS23410 0.13 -1.2 579,947 + RR42_RS23410 0.22 -2.9 579,981 + RR42_RS23410 0.26 -0.6 580,041 + RR42_RS23410 0.32 -0.0 580,041 + RR42_RS23410 0.32 -0.7 580,042 - RR42_RS23410 0.33 -0.3 580,202 + RR42_RS23410 0.50 -0.6 580,202 + RR42_RS23410 0.50 -0.7 580,203 - RR42_RS23410 0.50 -0.9 580,338 + RR42_RS23410 0.65 -1.8 580,338 + RR42_RS23410 0.65 -0.5 580,486 + RR42_RS23410 0.82 -0.4
Or see this region's nucleotide sequence