Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23175

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS23170 and RR42_RS23175 are separated by 192 nucleotidesRR42_RS23175 and RR42_RS23180 are separated by 219 nucleotides RR42_RS23170: RR42_RS23170 - LysR family transcriptional regulator, at 530,650 to 531,585 _RS23170 RR42_RS23175: RR42_RS23175 - mandelate racemase, at 531,778 to 532,947 _RS23175 RR42_RS23180: RR42_RS23180 - ligand-gated channel, at 533,167 to 535,353 _RS23180 Position (kb) 531 532 533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 531.068 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.533 kb on + strandat 531.621 kb on + strandat 531.622 kb on - strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.655 kb on - strandat 531.732 kb on - strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.838 kb on + strandat 531.839 kb on - strandat 531.841 kb on - strandat 531.841 kb on - strandat 532.225 kb on + strand, within RR42_RS23175at 532.240 kb on + strand, within RR42_RS23175at 532.240 kb on + strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.244 kb on - strand, within RR42_RS23175at 532.247 kb on - strand, within RR42_RS23175at 532.291 kb on + strand, within RR42_RS23175at 532.291 kb on + strand, within RR42_RS23175at 532.292 kb on - strand, within RR42_RS23175at 532.292 kb on - strand, within RR42_RS23175at 532.308 kb on + strand, within RR42_RS23175at 532.308 kb on + strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.309 kb on - strand, within RR42_RS23175at 532.486 kb on + strand, within RR42_RS23175at 532.540 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.543 kb on + strand, within RR42_RS23175at 532.544 kb on - strand, within RR42_RS23175at 532.610 kb on - strand, within RR42_RS23175at 532.664 kb on - strand, within RR42_RS23175at 532.678 kb on + strand, within RR42_RS23175at 532.679 kb on - strand, within RR42_RS23175at 532.679 kb on - strand, within RR42_RS23175at 532.801 kb on + strand, within RR42_RS23175at 532.802 kb on - strand, within RR42_RS23175at 532.861 kb on + strandat 532.861 kb on + strandat 532.861 kb on + strandat 532.862 kb on - strandat 532.862 kb on - strandat 532.862 kb on - strandat 532.915 kb on + strandat 532.993 kb on + strandat 532.993 kb on + strandat 532.994 kb on - strandat 532.994 kb on - strandat 532.994 kb on - strandat 533.246 kb on + strandat 533.246 kb on + strandat 533.247 kb on - strandat 533.509 kb on + strand, within RR42_RS23180at 533.510 kb on - strand, within RR42_RS23180at 533.561 kb on - strand, within RR42_RS23180at 533.561 kb on - strand, within RR42_RS23180at 533.595 kb on + strand, within RR42_RS23180at 533.669 kb on + strand, within RR42_RS23180at 533.702 kb on - strand, within RR42_RS23180at 533.702 kb on - strand, within RR42_RS23180at 533.734 kb on + strand, within RR42_RS23180at 533.734 kb on + strand, within RR42_RS23180at 533.734 kb on + strand, within RR42_RS23180at 533.734 kb on + strand, within RR42_RS23180at 533.734 kb on + strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.735 kb on - strand, within RR42_RS23180at 533.928 kb on - strand, within RR42_RS23180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
remove
530,837 + RR42_RS23170 0.20 +0.2
530,837 + RR42_RS23170 0.20 -0.1
530,837 + RR42_RS23170 0.20 +1.7
530,935 + RR42_RS23170 0.30 +0.2
530,935 + RR42_RS23170 0.30 +0.3
530,936 - RR42_RS23170 0.31 +0.7
530,936 - RR42_RS23170 0.31 +0.6
530,936 - RR42_RS23170 0.31 +0.2
530,936 - RR42_RS23170 0.31 +0.6
530,977 + RR42_RS23170 0.35 +0.4
530,977 + RR42_RS23170 0.35 -1.1
530,978 - RR42_RS23170 0.35 +0.5
530,978 - RR42_RS23170 0.35 +0.1
530,978 - RR42_RS23170 0.35 +0.7
531,068 + RR42_RS23170 0.45 +1.4
531,386 + RR42_RS23170 0.79 -0.9
531,386 + RR42_RS23170 0.79 +0.0
531,386 + RR42_RS23170 0.79 +0.7
531,386 + RR42_RS23170 0.79 +0.2
531,386 + RR42_RS23170 0.79 -0.0
531,386 + RR42_RS23170 0.79 -0.8
531,387 - RR42_RS23170 0.79 -0.6
531,387 - RR42_RS23170 0.79 +1.2
531,387 - RR42_RS23170 0.79 +0.1
531,387 - RR42_RS23170 0.79 +0.5
531,533 + +0.8
531,621 + +0.9
531,622 - +1.4
531,630 + +0.1
531,630 + +1.0
531,630 + -0.1
531,630 + +0.7
531,630 + -0.7
531,630 + +0.4
531,630 + +0.5
531,630 + -0.6
531,630 + +0.8
531,630 + +0.3
531,630 + +1.1
531,630 + +0.2
531,630 + +0.5
531,631 - +1.3
531,631 - -0.7
531,631 - -0.7
531,631 - +3.0
531,631 - +1.1
531,631 - -1.1
531,631 - -0.6
531,631 - -0.4
531,631 - -0.9
531,631 - +1.3
531,631 - -0.6
531,631 - +0.0
531,631 - -0.2
531,655 - -0.3
531,732 - +0.6
531,838 + -0.6
531,838 + +0.3
531,838 + +0.3
531,838 + +0.9
531,838 + -0.2
531,839 - +0.7
531,841 - +0.1
531,841 - +1.5
532,225 + RR42_RS23175 0.38 -0.6
532,240 + RR42_RS23175 0.39 -0.0
532,240 + RR42_RS23175 0.39 +0.5
532,244 - RR42_RS23175 0.40 +0.7
532,244 - RR42_RS23175 0.40 -0.9
532,244 - RR42_RS23175 0.40 -1.8
532,247 - RR42_RS23175 0.40 -0.6
532,291 + RR42_RS23175 0.44 -0.8
532,291 + RR42_RS23175 0.44 +1.1
532,292 - RR42_RS23175 0.44 -0.3
532,292 - RR42_RS23175 0.44 +0.5
532,308 + RR42_RS23175 0.45 +2.1
532,308 + RR42_RS23175 0.45 -0.5
532,309 - RR42_RS23175 0.45 +0.2
532,309 - RR42_RS23175 0.45 -0.5
532,309 - RR42_RS23175 0.45 +0.5
532,309 - RR42_RS23175 0.45 -0.5
532,486 + RR42_RS23175 0.61 +0.4
532,540 + RR42_RS23175 0.65 -1.5
532,543 + RR42_RS23175 0.65 +0.3
532,543 + RR42_RS23175 0.65 +0.1
532,543 + RR42_RS23175 0.65 -1.3
532,544 - RR42_RS23175 0.65 +2.3
532,610 - RR42_RS23175 0.71 -0.2
532,664 - RR42_RS23175 0.76 -0.5
532,678 + RR42_RS23175 0.77 -0.4
532,679 - RR42_RS23175 0.77 -0.5
532,679 - RR42_RS23175 0.77 +0.3
532,801 + RR42_RS23175 0.87 -0.9
532,802 - RR42_RS23175 0.88 -0.9
532,861 + +1.0
532,861 + -1.0
532,861 + +0.2
532,862 - +1.3
532,862 - -0.0
532,862 - -0.7
532,915 + -1.2
532,993 + +0.4
532,993 + -0.2
532,994 - -0.8
532,994 - -0.1
532,994 - -0.5
533,246 + +0.7
533,246 + +0.4
533,247 - +1.4
533,509 + RR42_RS23180 0.16 -2.2
533,510 - RR42_RS23180 0.16 +0.3
533,561 - RR42_RS23180 0.18 +0.0
533,561 - RR42_RS23180 0.18 -1.9
533,595 + RR42_RS23180 0.20 +0.4
533,669 + RR42_RS23180 0.23 +0.2
533,702 - RR42_RS23180 0.24 +0.1
533,702 - RR42_RS23180 0.24 -0.5
533,734 + RR42_RS23180 0.26 +0.3
533,734 + RR42_RS23180 0.26 +0.1
533,734 + RR42_RS23180 0.26 +0.4
533,734 + RR42_RS23180 0.26 -0.0
533,734 + RR42_RS23180 0.26 +0.5
533,735 - RR42_RS23180 0.26 +0.1
533,735 - RR42_RS23180 0.26 +0.1
533,735 - RR42_RS23180 0.26 +1.0
533,735 - RR42_RS23180 0.26 +0.1
533,735 - RR42_RS23180 0.26 +2.1
533,735 - RR42_RS23180 0.26 -0.1
533,735 - RR42_RS23180 0.26 +1.1
533,735 - RR42_RS23180 0.26 +0.1
533,735 - RR42_RS23180 0.26 +0.4
533,735 - RR42_RS23180 0.26 +0.6
533,928 - RR42_RS23180 0.35 -0.6

Or see this region's nucleotide sequence