Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22790 and RR42_RS22795 are separated by 66 nucleotides RR42_RS22795 and RR42_RS22800 are separated by 30 nucleotides
RR42_RS22790: RR42_RS22790 - MmgE/PrpD family protein, at 444,998 to 446,410
_RS22790
RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442
_RS22795
RR42_RS22800: RR42_RS22800 - DSBA oxidoreductase, at 447,473 to 449,029
_RS22800
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1 at 445.604 kb on + strand, within RR42_RS22790 at 445.944 kb on - strand, within RR42_RS22790 at 446.107 kb on + strand, within RR42_RS22790 at 446.270 kb on + strand at 446.270 kb on + strand at 446.271 kb on - strand at 446.271 kb on - strand at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.018 kb on - strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.787 kb on - strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.172 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.358 kb on - strand, within RR42_RS22800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml remove 445,604 + RR42_RS22790 0.43 +0.2 445,944 - RR42_RS22790 0.67 -1.4 446,107 + RR42_RS22790 0.78 -0.4 446,270 + -0.3 446,270 + -1.4 446,271 - +0.1 446,271 - +0.8 446,728 + RR42_RS22795 0.26 +0.8 446,728 + RR42_RS22795 0.26 -0.5 446,728 + RR42_RS22795 0.26 +1.5 446,729 - RR42_RS22795 0.26 +0.9 446,729 - RR42_RS22795 0.26 +0.2 446,729 - RR42_RS22795 0.26 -0.4 447,017 + RR42_RS22795 0.56 +0.3 447,017 + RR42_RS22795 0.56 -0.2 447,018 - RR42_RS22795 0.56 +0.7 447,230 + RR42_RS22795 0.78 +0.8 447,230 + RR42_RS22795 0.78 -0.2 447,231 - RR42_RS22795 0.78 -0.9 447,231 - RR42_RS22795 0.78 -0.2 447,231 - RR42_RS22795 0.78 -2.0 447,231 - RR42_RS22795 0.78 -1.2 447,787 - RR42_RS22800 0.20 -0.2 447,972 + RR42_RS22800 0.32 -0.4 447,972 + RR42_RS22800 0.32 -0.3 447,972 + RR42_RS22800 0.32 +0.5 448,170 + RR42_RS22800 0.45 +0.1 448,170 + RR42_RS22800 0.45 -1.7 448,171 - RR42_RS22800 0.45 -0.4 448,171 - RR42_RS22800 0.45 -0.4 448,171 - RR42_RS22800 0.45 +0.5 448,172 + RR42_RS22800 0.45 -0.3 448,357 + RR42_RS22800 0.57 +0.6 448,357 + RR42_RS22800 0.57 -0.7 448,357 + RR42_RS22800 0.57 -0.1 448,358 - RR42_RS22800 0.57 +0.6
Or see this region's nucleotide sequence