Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22450

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22445 and RR42_RS22450 overlap by 4 nucleotidesRR42_RS22450 and RR42_RS22455 are separated by 0 nucleotides RR42_RS22445: RR42_RS22445 - phosphoenolpyruvate phosphomutase, at 371,078 to 372,784 _RS22445 RR42_RS22450: RR42_RS22450 - phosphonopyruvate decarboxylase, at 372,781 to 373,962 _RS22450 RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027 _RS22455 Position (kb) 372 373 374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 371.946 kb on - strand, within RR42_RS22445at 371.946 kb on - strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445at 371.966 kb on + strand, within RR42_RS22445at 372.302 kb on + strand, within RR42_RS22445at 372.302 kb on + strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.303 kb on - strand, within RR42_RS22445at 372.304 kb on + strand, within RR42_RS22445at 372.304 kb on + strand, within RR42_RS22445at 372.305 kb on - strand, within RR42_RS22445at 372.345 kb on + strand, within RR42_RS22445at 372.401 kb on + strand, within RR42_RS22445at 372.665 kb on + strandat 372.666 kb on - strandat 372.666 kb on - strandat 372.666 kb on - strandat 372.733 kb on + strandat 372.877 kb on + strandat 372.878 kb on - strandat 372.878 kb on - strandat 372.904 kb on + strand, within RR42_RS22450at 372.904 kb on + strand, within RR42_RS22450at 372.905 kb on - strand, within RR42_RS22450at 372.905 kb on - strand, within RR42_RS22450at 373.233 kb on + strand, within RR42_RS22450at 373.233 kb on + strand, within RR42_RS22450at 373.234 kb on - strand, within RR42_RS22450at 373.234 kb on - strand, within RR42_RS22450at 373.256 kb on - strand, within RR42_RS22450at 373.416 kb on + strand, within RR42_RS22450at 373.504 kb on + strand, within RR42_RS22450at 373.504 kb on + strand, within RR42_RS22450at 373.505 kb on - strand, within RR42_RS22450at 373.505 kb on - strand, within RR42_RS22450at 373.642 kb on + strand, within RR42_RS22450at 373.642 kb on + strand, within RR42_RS22450at 373.960 kb on + strandat 373.960 kb on + strandat 373.961 kb on - strandat 373.961 kb on - strandat 373.961 kb on - strandat 373.961 kb on - strandat 373.970 kb on + strandat 373.970 kb on + strandat 373.971 kb on - strandat 374.098 kb on + strand, within RR42_RS22455at 374.098 kb on + strand, within RR42_RS22455at 374.098 kb on + strand, within RR42_RS22455at 374.098 kb on + strand, within RR42_RS22455at 374.098 kb on + strand, within RR42_RS22455at 374.099 kb on - strand, within RR42_RS22455at 374.099 kb on - strand, within RR42_RS22455at 374.099 kb on - strandat 374.099 kb on - strand, within RR42_RS22455at 374.257 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.605 kb on + strand, within RR42_RS22455at 374.605 kb on + strand, within RR42_RS22455at 374.606 kb on - strand, within RR42_RS22455at 374.608 kb on + strand, within RR42_RS22455at 374.608 kb on + strand, within RR42_RS22455at 374.652 kb on + strand, within RR42_RS22455at 374.652 kb on + strand, within RR42_RS22455at 374.661 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.673 kb on - strand, within RR42_RS22455at 374.680 kb on + strand, within RR42_RS22455at 374.680 kb on + strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.683 kb on + strand, within RR42_RS22455at 374.870 kb on - strand, within RR42_RS22455at 374.914 kb on + strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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371,946 - RR42_RS22445 0.51 -1.7
371,946 - RR42_RS22445 0.51 -2.2
371,966 + RR42_RS22445 0.52 -2.6
371,966 + RR42_RS22445 0.52 -1.2
371,966 + RR42_RS22445 0.52 -0.5
372,302 + RR42_RS22445 0.72 -3.8
372,302 + RR42_RS22445 0.72 -1.1
372,303 - RR42_RS22445 0.72 +0.5
372,303 - RR42_RS22445 0.72 -2.4
372,303 - RR42_RS22445 0.72 -2.5
372,303 - RR42_RS22445 0.72 -2.5
372,303 - RR42_RS22445 0.72 -2.2
372,303 - RR42_RS22445 0.72 -1.1
372,303 - RR42_RS22445 0.72 +0.1
372,303 - RR42_RS22445 0.72 -1.5
372,303 - RR42_RS22445 0.72 -1.9
372,303 - RR42_RS22445 0.72 -2.1
372,304 + RR42_RS22445 0.72 -2.6
372,304 + RR42_RS22445 0.72 -2.1
372,305 - RR42_RS22445 0.72 -0.2
372,345 + RR42_RS22445 0.74 -0.2
372,401 + RR42_RS22445 0.78 -0.7
372,665 + -0.4
372,666 - -1.5
372,666 - -2.0
372,666 - -2.0
372,733 + -3.1
372,877 + -0.8
372,878 - -0.4
372,878 - -1.0
372,904 + RR42_RS22450 0.10 -1.7
372,904 + RR42_RS22450 0.10 -1.7
372,905 - RR42_RS22450 0.10 +0.5
372,905 - RR42_RS22450 0.10 -2.0
373,233 + RR42_RS22450 0.38 -2.6
373,233 + RR42_RS22450 0.38 -0.4
373,234 - RR42_RS22450 0.38 -1.9
373,234 - RR42_RS22450 0.38 -0.8
373,256 - RR42_RS22450 0.40 -3.8
373,416 + RR42_RS22450 0.54 -1.2
373,504 + RR42_RS22450 0.61 -0.8
373,504 + RR42_RS22450 0.61 -3.6
373,505 - RR42_RS22450 0.61 -2.3
373,505 - RR42_RS22450 0.61 -1.5
373,642 + RR42_RS22450 0.73 -3.6
373,642 + RR42_RS22450 0.73 -2.0
373,960 + -0.6
373,960 + +0.6
373,961 - -1.5
373,961 - -1.4
373,961 - -1.4
373,961 - -3.3
373,970 + -2.9
373,970 + -2.4
373,971 - +0.8
374,098 + RR42_RS22455 0.13 -2.4
374,098 + RR42_RS22455 0.13 +0.2
374,098 + RR42_RS22455 0.13 -1.3
374,098 + RR42_RS22455 0.13 -2.0
374,098 + RR42_RS22455 0.13 -2.1
374,099 - RR42_RS22455 0.13 -1.3
374,099 - RR42_RS22455 0.13 -1.4
374,099 - -0.4
374,099 - RR42_RS22455 0.13 -1.1
374,257 + RR42_RS22455 0.28 -0.6
374,438 + RR42_RS22455 0.45 -2.6
374,438 + RR42_RS22455 0.45 -1.4
374,438 + RR42_RS22455 0.45 -1.1
374,439 - RR42_RS22455 0.45 +0.2
374,439 - RR42_RS22455 0.45 -1.5
374,439 - RR42_RS22455 0.45 -2.5
374,605 + RR42_RS22455 0.60 -2.1
374,605 + RR42_RS22455 0.60 -4.2
374,606 - RR42_RS22455 0.60 -1.4
374,608 + RR42_RS22455 0.61 -2.8
374,608 + RR42_RS22455 0.61 -1.3
374,652 + RR42_RS22455 0.65 -0.3
374,652 + RR42_RS22455 0.65 -3.6
374,661 + RR42_RS22455 0.66 -2.0
374,672 + RR42_RS22455 0.67 -1.4
374,672 + RR42_RS22455 0.67 -1.9
374,672 + RR42_RS22455 0.67 -1.6
374,672 + RR42_RS22455 0.67 -1.7
374,672 + RR42_RS22455 0.67 -1.4
374,672 + RR42_RS22455 0.67 -3.2
374,673 - RR42_RS22455 0.67 -2.6
374,680 + RR42_RS22455 0.67 -3.0
374,680 + RR42_RS22455 0.67 -0.8
374,681 - RR42_RS22455 0.67 -3.0
374,681 - RR42_RS22455 0.67 -3.3
374,681 - RR42_RS22455 0.67 -1.6
374,683 + RR42_RS22455 0.68 -1.4
374,870 - RR42_RS22455 0.85 -3.1
374,914 + RR42_RS22455 0.89 -1.7
374,915 - RR42_RS22455 0.89 -0.5
374,915 - RR42_RS22455 0.89 +1.2
374,915 - RR42_RS22455 0.89 -0.0
374,915 - RR42_RS22455 0.89 -2.4
374,933 + -1.6

Or see this region's nucleotide sequence