Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22240

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
326,827	+				+1.8
326,828	-				+0.2
326,828	-				-0.8
327,005	-				-0.8
327,651	+				-0.4
327,652	-				-0.1
327,652	-				-0.9
327,697	-				+0.4
327,751	+				-0.4
327,752	-				-1.1
327,752	-				-0.2
327,752	-				+1.6
327,755	-				+1.5
327,902	-		RR42_RS22240	0.15	+1.4
327,902	-		RR42_RS22240	0.15	-0.5
327,902	-		RR42_RS22240	0.15	-0.7
328,196	+		RR42_RS22240	0.38	-0.9
328,196	+		RR42_RS22240	0.38	+0.2
328,197	-		RR42_RS22240	0.38	-1.5
328,197	-		RR42_RS22240	0.38	-0.4
328,724	+		RR42_RS22240	0.78	-1.7
328,850	+		RR42_RS22240	0.88	+0.9
329,007	-				-1.6
329,024	+				-0.4
329,176	+				-1.4
329,177	-				+1.8
329,177	-				+1.0
329,177	-				+1.3
329,177	-				-0.3
329,197	-				-0.8
329,228	+				+0.1
329,228	+				+1.2
329,295	+				+0.5
329,295	+				-0.4
329,296	-				-0.5
329,297	+				+0.2
329,297	+				+1.0
329,297	+				-0.7
329,297	+				-1.1
329,298	-				-0.3
329,298	-				-0.7
329,301	+				-1.8
329,302	-				-2.2
329,302	-				-0.3
329,302	-				-1.8
329,379	+				-1.4
329,380	-				-0.2
329,391	+				-1.2
329,392	-				+0.0
329,466	+				-0.4
329,467	-				-1.4
329,467	-				+0.5
329,529	+		RR42_RS22245	0.16	+0.3
329,530	-		RR42_RS22245	0.17	+0.2
329,587	-		RR42_RS22245	0.23	-0.2
329,640	+		RR42_RS22245	0.28	+0.2
329,640	+		RR42_RS22245	0.28	-0.4
329,834	+		RR42_RS22245	0.49	+0.1
329,834	+		RR42_RS22245	0.49	+0.2
329,983	-		RR42_RS22245	0.64	-0.5