Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22115

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22110 and RR42_RS22115 are separated by 2 nucleotidesRR42_RS22115 and RR42_RS22120 are separated by 59 nucleotidesRR42_RS22120 and RR42_RS22125 are separated by 277 nucleotides RR42_RS22110: RR42_RS22110 - type VI secretion protein ImpG, at 299,996 to 301,819 _RS22110 RR42_RS22115: RR42_RS22115 - type VI secretion protein, at 301,822 to 302,868 _RS22115 RR42_RS22120: RR42_RS22120 - type VI secretion protein, at 302,928 to 303,434 _RS22120 RR42_RS22125: RR42_RS22125 - hypothetical protein, at 303,712 to 305,112 _RS22125 Position (kb) 301 302 303Strain fitness (log2 ratio) -2 -1 0 1at 301.014 kb on - strand, within RR42_RS22110at 301.176 kb on - strand, within RR42_RS22110at 301.345 kb on + strand, within RR42_RS22110at 301.346 kb on - strand, within RR42_RS22110at 301.473 kb on - strand, within RR42_RS22110at 301.736 kb on + strandat 301.897 kb on + strandat 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.029 kb on + strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.030 kb on - strand, within RR42_RS22115at 302.097 kb on - strand, within RR42_RS22115at 302.098 kb on + strand, within RR42_RS22115at 302.098 kb on + strand, within RR42_RS22115at 302.125 kb on + strand, within RR42_RS22115at 302.236 kb on + strand, within RR42_RS22115at 302.287 kb on + strand, within RR42_RS22115at 302.288 kb on - strand, within RR42_RS22115at 302.288 kb on - strand, within RR42_RS22115at 302.395 kb on - strand, within RR42_RS22115at 302.465 kb on - strand, within RR42_RS22115at 302.539 kb on + strand, within RR42_RS22115at 302.558 kb on + strand, within RR42_RS22115at 302.653 kb on + strand, within RR42_RS22115at 302.654 kb on - strand, within RR42_RS22115at 302.663 kb on - strand, within RR42_RS22115at 302.749 kb on + strand, within RR42_RS22115at 302.896 kb on + strandat 302.896 kb on + strandat 302.897 kb on - strandat 302.901 kb on + strandat 302.975 kb on + strandat 302.975 kb on + strandat 302.976 kb on - strandat 302.978 kb on - strandat 303.095 kb on + strand, within RR42_RS22120at 303.138 kb on + strand, within RR42_RS22120at 303.139 kb on - strand, within RR42_RS22120at 303.139 kb on - strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.177 kb on + strand, within RR42_RS22120at 303.178 kb on - strand, within RR42_RS22120at 303.300 kb on + strand, within RR42_RS22120at 303.504 kb on - strandat 303.506 kb on + strandat 303.507 kb on - strandat 303.515 kb on + strandat 303.526 kb on + strandat 303.526 kb on + strandat 303.527 kb on - strandat 303.531 kb on + strandat 303.531 kb on + strandat 303.531 kb on + strandat 303.532 kb on - strandat 303.532 kb on - strandat 303.543 kb on + strandat 303.637 kb on - strandat 303.705 kb on + strandat 303.730 kb on + strandat 303.732 kb on + strandat 303.732 kb on + strandat 303.733 kb on - strandat 303.832 kb on + strandat 303.833 kb on - strandat 303.833 kb on - strandat 303.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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301,014 - RR42_RS22110 0.56 +0.3
301,176 - RR42_RS22110 0.65 -0.1
301,345 + RR42_RS22110 0.74 +1.5
301,346 - RR42_RS22110 0.74 +0.6
301,473 - RR42_RS22110 0.81 -0.4
301,736 + +0.3
301,897 + -0.3
302,029 + RR42_RS22115 0.20 +0.4
302,029 + RR42_RS22115 0.20 -0.4
302,029 + RR42_RS22115 0.20 -0.4
302,029 + RR42_RS22115 0.20 -0.7
302,029 + RR42_RS22115 0.20 -0.5
302,030 - RR42_RS22115 0.20 -1.2
302,030 - RR42_RS22115 0.20 +0.2
302,030 - RR42_RS22115 0.20 -0.6
302,030 - RR42_RS22115 0.20 +0.8
302,030 - RR42_RS22115 0.20 -2.0
302,097 - RR42_RS22115 0.26 -0.8
302,098 + RR42_RS22115 0.26 -0.2
302,098 + RR42_RS22115 0.26 +0.8
302,125 + RR42_RS22115 0.29 -0.3
302,236 + RR42_RS22115 0.40 +0.9
302,287 + RR42_RS22115 0.44 -0.7
302,288 - RR42_RS22115 0.45 -0.7
302,288 - RR42_RS22115 0.45 +0.4
302,395 - RR42_RS22115 0.55 -0.7
302,465 - RR42_RS22115 0.61 -1.1
302,539 + RR42_RS22115 0.68 -0.8
302,558 + RR42_RS22115 0.70 -1.4
302,653 + RR42_RS22115 0.79 -0.9
302,654 - RR42_RS22115 0.79 +0.2
302,663 - RR42_RS22115 0.80 -0.4
302,749 + RR42_RS22115 0.89 +0.4
302,896 + -0.2
302,896 + -0.0
302,897 - +0.7
302,901 + -0.8
302,975 + -1.1
302,975 + +0.6
302,976 - +0.7
302,978 - +0.5
303,095 + RR42_RS22120 0.33 -1.8
303,138 + RR42_RS22120 0.41 +0.3
303,139 - RR42_RS22120 0.42 -0.1
303,139 - RR42_RS22120 0.42 +0.3
303,177 + RR42_RS22120 0.49 -0.0
303,177 + RR42_RS22120 0.49 +0.2
303,177 + RR42_RS22120 0.49 +0.1
303,178 - RR42_RS22120 0.49 +0.1
303,300 + RR42_RS22120 0.73 +1.3
303,504 - -1.0
303,506 + +0.5
303,507 - +1.2
303,515 + +0.8
303,526 + -0.2
303,526 + +0.1
303,527 - -1.0
303,531 + +1.0
303,531 + +0.0
303,531 + -0.4
303,532 - -0.8
303,532 - -0.6
303,543 + +1.3
303,637 - +1.4
303,705 + +0.6
303,730 + +0.0
303,732 + +1.1
303,732 + +0.6
303,733 - +0.7
303,832 + -0.0
303,833 - +0.1
303,833 - +0.2
303,833 - -0.0

Or see this region's nucleotide sequence