Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21370

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21365 and RR42_RS21370 are separated by 52 nucleotidesRR42_RS21370 and RR42_RS21375 are separated by 116 nucleotides RR42_RS21365: RR42_RS21365 - ABC transporter ATP-binding protein, at 122,248 to 123,885 _RS21365 RR42_RS21370: RR42_RS21370 - 4-aminobutyrate aminotransferase, at 123,938 to 125,200 _RS21370 RR42_RS21375: RR42_RS21375 - succinate-semialdehyde dehydrogenase, at 125,317 to 126,783 _RS21375 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.010 kb on + strand, within RR42_RS21365at 123.396 kb on + strand, within RR42_RS21365at 123.814 kb on + strandat 124.061 kb on + strandat 124.061 kb on + strandat 124.062 kb on - strandat 124.062 kb on - strandat 124.064 kb on - strandat 124.190 kb on + strand, within RR42_RS21370at 124.190 kb on + strand, within RR42_RS21370at 124.190 kb on + strand, within RR42_RS21370at 124.190 kb on + strand, within RR42_RS21370at 124.191 kb on - strand, within RR42_RS21370at 124.191 kb on - strand, within RR42_RS21370at 124.191 kb on - strand, within RR42_RS21370at 124.191 kb on - strand, within RR42_RS21370at 124.191 kb on - strand, within RR42_RS21370at 124.390 kb on - strand, within RR42_RS21370at 124.398 kb on - strand, within RR42_RS21370at 125.105 kb on + strandat 125.284 kb on - strandat 125.554 kb on + strand, within RR42_RS21375at 125.555 kb on - strand, within RR42_RS21375

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Doxycycline hyclate 0.0001 mg/ml
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123,010 + RR42_RS21365 0.47 +0.5
123,396 + RR42_RS21365 0.70 +0.0
123,814 + -1.1
124,061 + +0.6
124,061 + +0.8
124,062 - +0.5
124,062 - +0.4
124,064 - +0.4
124,190 + RR42_RS21370 0.20 -2.3
124,190 + RR42_RS21370 0.20 -1.3
124,190 + RR42_RS21370 0.20 +0.4
124,190 + RR42_RS21370 0.20 +0.7
124,191 - RR42_RS21370 0.20 +1.5
124,191 - RR42_RS21370 0.20 +0.0
124,191 - RR42_RS21370 0.20 +0.6
124,191 - RR42_RS21370 0.20 +0.4
124,191 - RR42_RS21370 0.20 +1.0
124,390 - RR42_RS21370 0.36 +0.2
124,398 - RR42_RS21370 0.36 -0.0
125,105 + -0.1
125,284 - -0.9
125,554 + RR42_RS21375 0.16 -0.3
125,555 - RR42_RS21375 0.16 +0.2

Or see this region's nucleotide sequence