Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20455

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,430,926	-		RR42_RS20450	0.56	-2.5
4,431,216	+		RR42_RS20450	0.77	-3.5
4,431,216	+		RR42_RS20450	0.77	+1.0
4,431,216	+		RR42_RS20450	0.77	-2.5
4,431,217	-		RR42_RS20450	0.77	-4.3
4,431,548	+				-3.0
4,431,548	+				-2.4
4,431,549	-				-0.8
4,431,658	-				-0.2
4,431,664	+				-1.0
4,431,664	+				+0.9
4,431,664	+				-0.3
4,431,664	+				-0.9
4,431,664	+				+0.4
4,431,664	+				+0.4
4,431,665	-				-0.9
4,431,760	+				-0.5
4,431,760	+				-0.3
4,431,760	+				-1.3
4,431,760	+				-0.7
4,431,760	+				+1.4
4,431,760	+				-1.3
4,431,760	+				-0.6
4,431,760	+				+0.2
4,431,761	-				-0.9
4,431,761	-				+0.5
4,431,761	-				-0.2
4,431,761	-				-0.3
4,431,761	-				-1.2
4,431,761	-				-0.4
4,431,761	-				-2.1
4,431,770	-				-0.9
4,431,770	-				-0.5
4,431,935	-		RR42_RS20455	0.20	+0.8
4,432,354	+		RR42_RS20455	0.69	-0.5
4,432,408	+		RR42_RS20455	0.75	+0.4
4,432,450	+		RR42_RS20455	0.80	+0.1
4,432,451	-		RR42_RS20455	0.80	+0.4
4,432,451	-		RR42_RS20455	0.80	+1.1
4,432,451	-		RR42_RS20455	0.80	+0.3
4,432,451	-		RR42_RS20455	0.80	+0.5
4,432,451	-		RR42_RS20455	0.80	-0.1
4,432,483	+		RR42_RS20455	0.84	-3.1
4,432,483	+		RR42_RS20455	0.84	-0.7
4,432,483	+		RR42_RS20455	0.84	+0.6
4,432,484	-		RR42_RS20455	0.84	+0.5
4,432,484	-		RR42_RS20455	0.84	-1.2
4,432,484	-		RR42_RS20455	0.84	+1.8
4,432,678	+				+0.2
4,432,704	+				-0.5
4,432,704	+				+0.8
4,432,704	+				-0.2
4,432,704	+				-1.7
4,432,705	-				-1.1
4,432,705	-				-0.6
4,432,705	-				+0.9
4,432,705	-				+0.5
4,432,708	+				-0.6
4,432,708	+				-0.0
4,432,709	-				+0.2
4,432,711	+				-0.4
4,432,806	+				+0.1
4,432,807	-				+0.3
4,433,199	+		RR42_RS20460	0.61	+0.3
4,433,227	+		RR42_RS20460	0.66	-0.4
4,433,228	-		RR42_RS20460	0.66	+1.2
4,433,365	+		RR42_RS20460	0.87	-0.6
4,433,366	-		RR42_RS20460	0.87	-1.0
4,433,366	-		RR42_RS20460	0.87	+0.6
4,433,367	+		RR42_RS20460	0.88	+0.5
4,433,367	+		RR42_RS20460	0.88	-0.0
4,433,367	+		RR42_RS20460	0.88	-0.4
4,433,367	+		RR42_RS20460	0.88	-0.9
4,433,368	-		RR42_RS20460	0.88	-0.4
4,433,368	-		RR42_RS20460	0.88	-0.6
4,433,368	-		RR42_RS20460	0.88	+0.2
4,433,368	-		RR42_RS20460	0.88	+0.4
4,433,368	-		RR42_RS20460	0.88	-0.2
4,433,434	+				-0.6
4,433,434	+				-0.3
4,433,435	-				+1.2
4,433,435	-				+1.1
4,433,469	+				-1.6
4,433,470	-				-1.4
4,433,541	+				-0.4
4,433,541	+				-0.3
4,433,541	+				-0.2
4,433,542	-				-0.2