Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19465

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,203,686	+				-1.3
4,203,686	+				+0.3
4,203,687	-				+0.3
4,203,697	-				+0.5
4,203,742	+				-1.8
4,203,742	+				+0.3
4,203,743	-				-0.6
4,203,743	-				-0.1
4,203,764	+				-0.8
4,203,807	-				-2.7
4,203,807	-				-0.1
4,203,807	-				-1.5
4,203,855	+				+0.3
4,203,855	+				+0.5
4,203,856	-				+0.1
4,203,856	-				-0.8
4,203,861	+				+1.3
4,203,861	+				+0.8
4,203,871	+				-1.1
4,203,871	+				-0.7
4,203,872	-				-1.9
4,203,872	-				+0.7
4,203,872	-				-1.7
4,204,110	+		RR42_RS19460	0.31	-3.3
4,204,273	+		RR42_RS19460	0.55	+0.1
4,204,274	-		RR42_RS19460	0.55	-0.8
4,204,274	-		RR42_RS19460	0.55	-0.9
4,204,335	+		RR42_RS19460	0.64	+0.1
4,204,335	+		RR42_RS19460	0.64	-2.0
4,204,336	-		RR42_RS19460	0.64	-1.0
4,204,405	-		RR42_RS19460	0.74	+1.3
4,204,405	-		RR42_RS19460	0.74	-0.6
4,204,428	+		RR42_RS19460	0.77	-1.0
4,204,429	-		RR42_RS19460	0.77	+0.7
4,204,503	+		RR42_RS19460	0.88	-2.0
4,204,503	+		RR42_RS19460	0.88	-0.6
4,204,503	+		RR42_RS19460	0.88	-0.2
4,204,503	+		RR42_RS19460	0.88	-0.3
4,204,503	+		RR42_RS19460	0.88	-0.3
4,204,504	-		RR42_RS19460	0.88	-0.8
4,204,504	-		RR42_RS19460	0.88	-0.6
4,204,504	-		RR42_RS19460	0.88	-2.7
4,204,504	-		RR42_RS19460	0.88	-1.4
4,204,734	+		RR42_RS19465	0.13	-0.5
4,204,735	-		RR42_RS19465	0.13	+1.4
4,204,807	+		RR42_RS19465	0.28	-1.3
4,204,807	+		RR42_RS19465	0.28	-0.9
4,204,807	+		RR42_RS19465	0.28	+0.6
4,204,807	+		RR42_RS19465	0.28	-0.4
4,204,807	+		RR42_RS19465	0.28	-0.7
4,204,808	-		RR42_RS19465	0.28	+0.5
4,204,941	+		RR42_RS19465	0.55	-0.2
4,204,941	+		RR42_RS19465	0.55	-0.0
4,204,941	+		RR42_RS19465	0.55	+0.5
4,204,941	+		RR42_RS19465	0.55	+0.0
4,204,942	-		RR42_RS19465	0.55	+0.1
4,204,942	-		RR42_RS19465	0.55	-0.7
4,204,942	-		RR42_RS19465	0.55	-2.0
4,204,942	-		RR42_RS19465	0.55	-0.6
4,204,942	-		RR42_RS19465	0.55	+0.3
4,204,949	+		RR42_RS19465	0.57	-0.2
4,204,949	+		RR42_RS19465	0.57	+1.6
4,204,949	+		RR42_RS19465	0.57	-1.9
4,204,949	+		RR42_RS19465	0.57	+0.2
4,204,949	+		RR42_RS19465	0.57	-0.0
4,204,949	+		RR42_RS19465	0.57	-0.7
4,204,950	-		RR42_RS19465	0.57	+1.0
4,204,950	-		RR42_RS19465	0.57	-1.8
4,204,951	+		RR42_RS19465	0.57	-0.8
4,204,951	+		RR42_RS19465	0.57	-0.3
4,204,951	+		RR42_RS19465	0.57	-1.0
4,204,951	+		RR42_RS19465	0.57	+0.7
4,204,951	+		RR42_RS19465	0.57	-0.1
4,204,951	+		RR42_RS19465	0.57	-1.3
4,204,952	-		RR42_RS19465	0.57	-0.3
4,204,952	-		RR42_RS19465	0.57	+1.8
4,204,952	-		RR42_RS19465	0.57	+1.3
4,204,952	-		RR42_RS19465	0.57	+0.2
4,204,952	-		RR42_RS19465	0.57	+0.3
4,205,230	+				-0.4
4,205,231	-				-0.2
4,205,316	+				-0.0
4,205,714	+		RR42_RS19470	0.27	-0.3
4,205,715	-		RR42_RS19470	0.27	-0.3
4,205,849	-		RR42_RS19470	0.50	-1.2
4,205,990	+		RR42_RS19470	0.75	+0.1
4,205,990	+		RR42_RS19470	0.75	-0.3
4,205,990	+		RR42_RS19470	0.75	-0.8
4,205,990	+		RR42_RS19470	0.75	-0.2