Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19010

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,117,341	+		RR42_RS19005	0.34	+0.2
4,117,341	+		RR42_RS19005	0.34	+0.3
4,117,342	-		RR42_RS19005	0.34	-1.0
4,117,718	+		RR42_RS19005	0.68	-0.7
4,117,718	+		RR42_RS19005	0.68	+1.3
4,117,718	+		RR42_RS19005	0.68	-1.0
4,117,719	-		RR42_RS19005	0.68	+0.6
4,117,926	-		RR42_RS19005	0.87	-0.1
4,118,033	+				+1.3
4,118,179	+		RR42_RS19010	0.20	-1.3
4,118,179	+		RR42_RS19010	0.20	+0.3
4,118,179	+		RR42_RS19010	0.20	-3.6
4,118,179	+		RR42_RS19010	0.20	-2.9
4,118,179	+		RR42_RS19010	0.20	-0.4
4,118,180	-		RR42_RS19010	0.20	-1.3
4,118,182	+		RR42_RS19010	0.20	-2.1
4,118,182	+		RR42_RS19010	0.20	-0.8
4,118,183	-		RR42_RS19010	0.20	+0.0
4,118,183	-		RR42_RS19010	0.20	-0.8
4,118,183	-		RR42_RS19010	0.20	-0.5
4,118,262	+		RR42_RS19010	0.33	-2.9
4,118,262	+		RR42_RS19010	0.33	+0.2
4,118,262	+		RR42_RS19010	0.33	-1.4
4,118,263	-		RR42_RS19010	0.33	-1.7
4,118,263	-		RR42_RS19010	0.33	-1.0
4,118,365	-		RR42_RS19010	0.50	+0.1
4,118,531	-		RR42_RS19010	0.77	-1.6
4,118,580	+		RR42_RS19010	0.85	-1.3
4,118,736	+				-0.7
4,118,736	+				-1.0
4,118,736	+				-1.7
4,118,736	+				-0.8
4,118,736	+				-2.0
4,118,736	+				-1.4
4,118,736	+				-1.6
4,118,736	+				-1.2
4,118,736	+				-1.3
4,118,737	-				+1.3
4,118,737	-				+2.2
4,118,737	-				-0.4
4,118,737	-				+0.3
4,118,737	-				+0.1
4,118,737	-				-0.4
4,118,737	-				-0.6
4,118,737	-				+0.8
4,118,737	-				+0.6
4,118,737	-				+0.7
4,118,857	+				+0.5
4,118,857	+				+0.4
4,118,894	+				+0.6
4,118,895	-				-2.1
4,118,895	-				-0.5
4,118,895	-				+0.1
4,118,895	-				-0.1
4,118,920	-				-0.6
4,119,076	+				+1.5
4,119,078	+				+0.8
4,119,078	+				+0.3
4,119,078	+				+0.3
4,119,078	+				-2.7
4,119,078	+				+2.2
4,119,078	+				+0.0
4,119,078	+				-0.9
4,119,079	-				+0.4
4,119,079	-				+1.3
4,119,079	-				-0.8
4,119,079	-				+1.8
4,119,079	-				+0.4
4,119,079	-				-0.4
4,119,079	-				+0.0
4,119,306	+		RR42_RS19015	0.18	+0.2
4,119,307	-		RR42_RS19015	0.18	-1.0
4,119,343	+		RR42_RS19015	0.20	-0.5
4,119,343	+		RR42_RS19015	0.20	+0.5
4,119,343	+		RR42_RS19015	0.20	-1.0
4,119,343	+		RR42_RS19015	0.20	+0.3
4,119,344	-		RR42_RS19015	0.20	+1.5
4,119,344	-		RR42_RS19015	0.20	+0.6
4,119,564	+		RR42_RS19015	0.30	+2.6
4,119,564	+		RR42_RS19015	0.30	-0.5
4,119,564	+		RR42_RS19015	0.30	-0.1
4,119,564	+		RR42_RS19015	0.30	+0.5
4,119,564	+		RR42_RS19015	0.30	-2.4
4,119,564	+		RR42_RS19015	0.30	-0.3
4,119,564	+		RR42_RS19015	0.30	-1.3
4,119,565	-		RR42_RS19015	0.30	-0.8
4,119,565	-		RR42_RS19015	0.30	+1.0
4,119,565	-		RR42_RS19015	0.30	+0.6
4,119,565	-		RR42_RS19015	0.30	+1.0
4,119,565	-		RR42_RS19015	0.30	-0.1
4,119,565	-		RR42_RS19015	0.30	+0.1
4,119,637	+		RR42_RS19015	0.33	-2.0