Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18985

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,107,253	+				-1.7
4,107,254	-				+0.1
4,107,254	-				-0.8
4,107,254	-				-0.7
4,107,254	-				-1.8
4,107,254	-				+0.3
4,107,348	+				-0.1
4,107,348	+				+0.8
4,107,377	+				+0.1
4,107,377	+				+0.2
4,107,377	+				+1.3
4,107,377	+				+0.2
4,107,377	+				-1.3
4,107,394	+				+1.1
4,107,395	-				+0.4
4,107,395	-				+1.3
4,107,450	+				+0.6
4,107,450	+				-0.3
4,107,450	+				-0.5
4,107,450	+				+0.0
4,107,450	+				+1.0
4,107,450	+				+2.1
4,107,450	+				+1.8
4,107,450	+				+0.1
4,107,451	-				-0.8
4,107,451	-				+2.9
4,107,451	-				+0.8
4,107,507	+				+0.4
4,107,507	+				+0.7
4,107,507	+				-0.0
4,107,507	+				-0.3
4,107,507	+				-1.6
4,107,508	-				+0.5
4,107,508	-				-0.2
4,107,508	-				+0.7
4,107,509	+				-1.0
4,107,530	+				+1.3
4,107,530	+				+0.2
4,107,530	+				+0.0
4,107,530	+				-0.4
4,107,531	-				+0.6
4,107,531	-				+0.2
4,107,531	-				-0.6
4,107,531	-				+1.0
4,107,531	-				+0.1
4,107,698	+		RR42_RS18980	0.33	+1.4
4,107,698	+		RR42_RS18980	0.33	-0.4
4,107,698	+		RR42_RS18980	0.33	-0.5
4,107,699	-		RR42_RS18980	0.33	-0.7
4,107,699	-		RR42_RS18980	0.33	-0.1
4,107,699	-		RR42_RS18980	0.33	+0.5
4,107,699	-		RR42_RS18980	0.33	+0.3
4,107,814	+		RR42_RS18980	0.55	-1.0
4,107,959	+		RR42_RS18980	0.82	-0.3
4,108,011	-				-0.6
4,108,011	-				-1.5
4,108,011	-				-0.1
4,108,011	-				+0.1
4,108,039	+				+1.1
4,108,068	-				+0.0
4,108,069	+				+0.0
4,108,293	+				+0.9
4,108,294	-				-2.8
4,108,294	-				-2.9
4,108,594	-		RR42_RS18985	0.30	-1.3
4,108,684	+		RR42_RS18985	0.36	-2.4
4,108,685	-		RR42_RS18985	0.36	-1.1
4,108,688	+		RR42_RS18985	0.37	-0.6
4,108,688	+		RR42_RS18985	0.37	-1.4
4,108,688	+		RR42_RS18985	0.37	-2.8
4,108,688	+		RR42_RS18985	0.37	-3.2
4,108,689	-		RR42_RS18985	0.37	-0.5
4,108,689	-		RR42_RS18985	0.37	-0.5
4,108,932	+		RR42_RS18985	0.53	-1.0
4,108,932	+		RR42_RS18985	0.53	+1.3
4,108,932	+		RR42_RS18985	0.53	-1.4
4,108,932	+		RR42_RS18985	0.53	-4.2
4,108,933	-		RR42_RS18985	0.53	-2.8
4,108,933	-		RR42_RS18985	0.53	-0.5
4,108,933	-		RR42_RS18985	0.53	-3.0
4,109,064	+		RR42_RS18985	0.62	-1.7
4,109,065	-		RR42_RS18985	0.62	-0.9
4,109,400	+		RR42_RS18985	0.85	-0.7
4,109,401	-		RR42_RS18985	0.85	-1.6
4,109,401	-		RR42_RS18985	0.85	-2.5
4,109,536	-				-2.0
4,109,536	-				-3.1
4,109,536	-				-2.3
4,109,566	-				-2.7
4,109,566	-				-1.3
4,109,676	+				-1.1
4,109,676	+				-1.4
4,109,800	+				-4.5
4,109,800	+				-1.6
4,109,800	+				-3.0
4,109,800	+				-2.6
4,109,801	-				+0.5
4,109,801	-				+1.2
4,109,801	-				+0.6
4,109,801	-				-0.7
4,109,825	-				-1.0
4,109,825	-				+0.7
4,110,086	-				+0.8
4,110,086	-				-1.0
4,110,086	-				-1.0
4,110,086	-				-0.8
4,110,086	-				-0.9
4,110,091	+				-0.7
4,110,091	+				-0.3
4,110,091	+				-0.1
4,110,091	+				-0.2
4,110,092	-				-0.9
4,110,092	-				-1.1
4,110,092	-				+3.6
4,110,092	-				-0.8
4,110,092	-				-1.1
4,110,167	+				-0.8
4,110,167	+				-1.8
4,110,167	+				+0.7
4,110,169	+				-1.4
4,110,169	+				-0.9
4,110,169	+				-2.0
4,110,170	-				-0.4
4,110,170	-				-1.3
4,110,284	-		RR42_RS18990	0.11	+1.3
4,110,385	+		RR42_RS18990	0.13	-1.2
4,110,386	-		RR42_RS18990	0.13	+0.7
4,110,386	-		RR42_RS18990	0.13	-1.8
4,110,386	-		RR42_RS18990	0.13	-0.6
4,110,402	+		RR42_RS18990	0.14	-1.1
4,110,403	-		RR42_RS18990	0.14	-1.5
4,110,403	-		RR42_RS18990	0.14	+1.3
4,110,508	+		RR42_RS18990	0.16	-0.3
4,110,564	-		RR42_RS18990	0.17	+2.1