Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18840

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,083,349	+		RR42_RS18830	0.62	-0.7
4,083,349	+		RR42_RS18830	0.62	+1.2
4,083,349	+		RR42_RS18830	0.62	-0.6
4,083,350	-		RR42_RS18830	0.62	+1.2
4,083,350	-		RR42_RS18830	0.62	+0.6
4,083,350	-		RR42_RS18830	0.62	+1.0
4,083,590	-				+0.5
4,083,602	-				+1.5
4,083,602	-				-3.1
4,083,747	+		RR42_RS18835	0.23	+0.0
4,083,748	-		RR42_RS18835	0.24	-1.0
4,083,748	-		RR42_RS18835	0.24	+0.3
4,083,748	-		RR42_RS18835	0.24	-0.1
4,083,748	-		RR42_RS18835	0.24	-0.1
4,083,748	-		RR42_RS18835	0.24	+1.1
4,083,783	+		RR42_RS18835	0.28	+0.0
4,084,032	+		RR42_RS18835	0.62	+0.9
4,084,033	-		RR42_RS18835	0.62	-0.0
4,084,033	-		RR42_RS18835	0.62	-0.2
4,084,033	-		RR42_RS18835	0.62	+0.3
4,084,214	+		RR42_RS18835	0.86	+0.5
4,084,215	-		RR42_RS18835	0.86	+0.8
4,084,215	-		RR42_RS18835	0.86	-0.1
4,084,254	+				-0.1
4,084,254	+				-0.4
4,084,254	+				-0.7
4,084,255	-				-1.3
4,084,255	-				-1.1
4,084,263	+				-0.3
4,084,264	-				+0.6
4,084,294	-				-0.5
4,084,294	-				-0.0
4,084,294	-				+1.2
4,084,319	-				-0.1
4,084,319	-				+1.9
4,084,337	+				-0.0
4,084,337	+				+0.7
4,084,524	+		RR42_RS18840	0.16	+0.0
4,084,713	+		RR42_RS18840	0.31	+0.1
4,084,720	+		RR42_RS18840	0.32	+0.1
4,084,877	+		RR42_RS18840	0.45	-0.5
4,085,101	-		RR42_RS18840	0.64	-0.0
4,085,101	-		RR42_RS18840	0.64	+0.7
4,085,101	-		RR42_RS18840	0.64	+1.2
4,085,370	-		RR42_RS18840	0.86	-0.7
4,085,465	-				+0.0
4,085,465	-				+0.4
4,085,465	-				-0.1
4,085,465	-				-2.8
4,085,465	-				-0.4
4,085,562	+				+0.5
4,085,563	-				+0.8
4,085,563	-				-0.8
4,085,570	+				+0.7
4,085,570	+				+0.5
4,085,570	+				-0.1
4,085,570	+				-1.0
4,085,571	-				-0.8
4,085,571	-				-0.4
4,085,571	-				-0.7
4,085,571	-				+3.3
4,085,634	-				-0.9
4,085,686	+				-0.1
4,085,754	+				+0.7
4,085,755	-				+0.3
4,085,853	+				-0.7
4,085,853	+				+1.1
4,085,853	+				-0.1
4,085,853	+				-0.3
4,085,853	+				+1.3
4,085,854	-				+2.3
4,085,854	-				-0.7
4,085,854	-				-1.3
4,085,883	-				+0.3
4,085,932	+				+0.6
4,085,998	+				-2.7
4,085,998	+				-2.5
4,085,998	+				-2.9
4,086,026	-				-1.3