Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18540

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,010,716	-		RR42_RS18535	0.41	+0.1
4,010,716	-		RR42_RS18535	0.41	+2.0
4,010,716	-		RR42_RS18535	0.41	-1.6
4,010,737	+		RR42_RS18535	0.43	-0.1
4,010,825	-		RR42_RS18535	0.52	+0.5
4,010,854	+		RR42_RS18535	0.55	+0.1
4,010,855	-		RR42_RS18535	0.55	+0.0
4,010,855	-		RR42_RS18535	0.55	-0.2
4,010,977	+		RR42_RS18535	0.68	-3.0
4,011,028	+		RR42_RS18535	0.73	+0.3
4,011,028	+		RR42_RS18535	0.73	+0.4
4,011,029	-		RR42_RS18535	0.73	-0.2
4,011,176	+		RR42_RS18535	0.88	+0.0
4,011,176	+		RR42_RS18535	0.88	+0.1
4,011,176	+		RR42_RS18535	0.88	-1.5
4,011,177	-		RR42_RS18535	0.88	-0.1
4,011,178	+		RR42_RS18535	0.88	-2.9
4,011,178	+		RR42_RS18535	0.88	-1.3
4,011,178	+		RR42_RS18535	0.88	-1.6
4,011,212	-				+1.2
4,011,284	+				+0.9
4,011,284	+				-0.1
4,011,285	-				+0.2
4,011,285	-				+0.6
4,011,296	-				+0.5
4,011,296	-				-0.4
4,011,296	-				-0.4
4,011,407	+				-0.1
4,011,408	-				+1.0
4,011,591	-		RR42_RS18540	0.14	-0.5
4,011,671	+		RR42_RS18540	0.19	-0.3
4,011,671	+		RR42_RS18540	0.19	+1.1
4,011,671	+		RR42_RS18540	0.19	-0.6
4,011,728	+		RR42_RS18540	0.23	-1.3
4,011,747	-		RR42_RS18540	0.24	-0.4
4,011,815	+		RR42_RS18540	0.29	-2.8
4,011,815	+		RR42_RS18540	0.29	+0.5
4,011,848	+		RR42_RS18540	0.31	+1.0
4,011,848	+		RR42_RS18540	0.31	+1.7
4,011,848	+		RR42_RS18540	0.31	-0.2
4,011,849	-		RR42_RS18540	0.31	+3.3
4,011,849	-		RR42_RS18540	0.31	-1.4
4,011,849	-		RR42_RS18540	0.31	-0.3
4,011,976	-		RR42_RS18540	0.40	+0.5
4,012,001	+		RR42_RS18540	0.41	+0.4
4,012,001	+		RR42_RS18540	0.41	-0.6
4,012,001	+		RR42_RS18540	0.41	+0.3
4,012,001	+		RR42_RS18540	0.41	-0.3
4,012,002	-		RR42_RS18540	0.41	-0.3
4,012,002	-		RR42_RS18540	0.41	-0.1
4,012,002	-		RR42_RS18540	0.41	-0.9
4,012,148	+		RR42_RS18540	0.51	-0.1
4,012,148	+		RR42_RS18540	0.51	+1.1
4,012,148	+		RR42_RS18540	0.51	-0.9
4,012,148	+		RR42_RS18540	0.51	-1.2
4,012,148	+		RR42_RS18540	0.51	-0.5
4,012,148	+		RR42_RS18540	0.51	-1.0
4,012,148	+		RR42_RS18540	0.51	-0.1
4,012,148	+		RR42_RS18540	0.51	-0.3
4,012,148	+		RR42_RS18540	0.51	-0.9
4,012,148	+		RR42_RS18540	0.51	-0.3
4,012,149	-		RR42_RS18540	0.51	+0.7
4,012,149	-		RR42_RS18540	0.51	-0.7
4,012,149	-		RR42_RS18540	0.51	-1.0
4,012,149	-		RR42_RS18540	0.51	-0.3
4,012,149	-		RR42_RS18540	0.51	+1.1
4,012,149	-		RR42_RS18540	0.51	+0.5
4,012,149	-		RR42_RS18540	0.51	+0.3
4,012,149	-		RR42_RS18540	0.51	-1.5
4,012,149	-		RR42_RS18540	0.51	-0.1
4,012,166	+		RR42_RS18540	0.52	+0.2
4,012,167	-		RR42_RS18540	0.52	-2.2
4,012,167	-		RR42_RS18540	0.52	-0.3
4,012,167	-		RR42_RS18540	0.52	+0.9
4,012,192	+		RR42_RS18540	0.54	+0.4
4,012,193	-		RR42_RS18540	0.54	-0.7
4,012,445	+		RR42_RS18540	0.71	+0.5
4,012,446	-		RR42_RS18540	0.71	+0.6
4,012,446	-		RR42_RS18540	0.71	+0.2
4,012,484	+		RR42_RS18540	0.73	+0.5
4,012,514	+		RR42_RS18540	0.75	-0.7
4,012,570	+		RR42_RS18540	0.79	-0.3
4,012,571	-		RR42_RS18540	0.79	-1.2
4,012,697	+		RR42_RS18540	0.88	-0.7
4,012,697	+		RR42_RS18540	0.88	+0.4
4,012,697	-		RR42_RS18540	0.88	+0.3
4,012,698	-		RR42_RS18540	0.88	-0.6
4,012,698	-		RR42_RS18540	0.88	-0.0
4,012,698	-		RR42_RS18540	0.88	-0.1
4,012,700	+		RR42_RS18540	0.88	-1.9
4,012,700	+		RR42_RS18540	0.88	+0.1
4,012,700	+		RR42_RS18540	0.88	+0.3
4,012,701	-		RR42_RS18540	0.88	-1.0
4,012,701	-		RR42_RS18540	0.88	-1.3
4,012,701	-		RR42_RS18540	0.88	-1.0
4,012,704	+		RR42_RS18540	0.88	+1.0
4,012,871	-				+0.7
4,012,904	+				-0.1
4,012,904	+				-1.4
4,012,916	+				-0.2
4,012,916	+				-0.4
4,012,916	+				-1.0
4,012,917	-				-1.3
4,013,026	+		RR42_RS18545	0.15	-0.2
4,013,056	+		RR42_RS18545	0.18	+0.6
4,013,446	+		RR42_RS18545	0.60	+1.7
4,013,446	+		RR42_RS18545	0.60	+0.8
4,013,447	-		RR42_RS18545	0.60	+0.4
4,013,447	-		RR42_RS18545	0.60	+0.1
4,013,447	-		RR42_RS18545	0.60	+0.2