Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18505

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
4,003,797	-		RR42_RS18500	0.40	-1.0
4,003,797	-		RR42_RS18500	0.40	-0.3
4,004,284	+		RR42_RS18500	0.73	-0.7
4,004,285	-		RR42_RS18500	0.73	+0.9
4,004,336	+		RR42_RS18500	0.76	+0.1
4,004,337	-		RR42_RS18500	0.76	+0.3
4,004,407	-		RR42_RS18500	0.81	+0.4
4,004,565	-				-1.0
4,004,565	-				-1.6
4,004,565	-				-0.7
4,004,583	+				+0.1
4,004,757	+				+1.5
4,004,757	+				-0.3
4,004,758	-				-1.8
4,004,758	-				-1.2
4,005,153	+		RR42_RS18505	0.36	-0.6
4,005,153	+		RR42_RS18505	0.36	-0.3
4,005,215	-		RR42_RS18505	0.41	+1.3
4,005,217	+		RR42_RS18505	0.41	+1.2
4,005,218	-		RR42_RS18505	0.41	+1.0
4,005,218	-		RR42_RS18505	0.41	-0.8
4,005,218	-		RR42_RS18505	0.41	-0.2
4,005,229	-		RR42_RS18505	0.42	+0.5
4,005,321	+		RR42_RS18505	0.50	-0.2
4,005,322	-		RR42_RS18505	0.50	-0.5
4,005,322	-		RR42_RS18505	0.50	-0.5
4,005,322	-		RR42_RS18505	0.50	+0.8
4,005,360	+		RR42_RS18505	0.53	-1.9
4,005,361	-		RR42_RS18505	0.53	-0.3
4,005,361	-		RR42_RS18505	0.53	+0.7
4,005,361	-		RR42_RS18505	0.53	-0.6
4,005,475	+		RR42_RS18505	0.62	-0.7
4,005,580	-		RR42_RS18505	0.71	-0.5
4,005,580	-		RR42_RS18505	0.71	-0.4
4,005,580	-		RR42_RS18505	0.71	+0.3
4,005,967	+				-0.6
4,005,968	-				-0.1
4,005,968	-				+1.0
4,005,976	+				-0.7
4,005,976	+				+0.1
4,005,976	+				-0.4
4,005,977	-				+0.4
4,005,977	-				-0.2
4,005,977	-				+0.3
4,006,041	+				+0.5
4,006,042	-				+0.0
4,006,353	-		RR42_RS18510	0.54	+1.8
4,006,417	+		RR42_RS18510	0.69	-0.9
4,006,417	+		RR42_RS18510	0.69	-0.3
4,006,417	+		RR42_RS18510	0.69	+1.2
4,006,418	-		RR42_RS18510	0.69	-1.8
4,006,418	-		RR42_RS18510	0.69	+1.0
4,006,581	+				-0.3
4,006,582	-				+0.4
4,006,582	-				-0.9
4,006,612	+				-0.0
4,006,612	+				-0.3
4,006,613	-				-0.2
4,006,613	-				-0.5
4,006,613	-				-1.9
4,006,613	-				+0.9
4,006,613	-				+0.7
4,006,613	-				+1.3
4,006,616	+				+0.6
4,006,616	+				+1.7
4,006,616	+				-0.6
4,006,616	+				+1.8
4,006,616	+				+0.1
4,006,616	+				+0.0
4,006,616	+				+0.4
4,006,616	+				+0.4
4,006,616	+				-0.0
4,006,616	+				-1.7
4,006,617	-				+0.7
4,006,617	-				+0.1
4,006,876	+		RR42_RS18515	0.27	+1.2
4,006,876	+		RR42_RS18515	0.27	-0.6
4,006,876	+		RR42_RS18515	0.27	+0.4
4,006,876	+		RR42_RS18515	0.27	+0.6
4,006,885	+		RR42_RS18515	0.28	+1.5
4,006,886	-		RR42_RS18515	0.28	+0.2