Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18155

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,927,910	+		RR42_RS18150	0.53	+1.4
3,927,910	+		RR42_RS18150	0.53	+0.5
3,928,063	+		RR42_RS18150	0.62	+0.9
3,928,063	+		RR42_RS18150	0.62	-1.1
3,928,063	+		RR42_RS18150	0.62	-0.8
3,928,063	+		RR42_RS18150	0.62	+0.1
3,928,063	+		RR42_RS18150	0.62	-0.4
3,928,064	-		RR42_RS18150	0.62	-0.6
3,928,064	-		RR42_RS18150	0.62	-0.6
3,928,064	-		RR42_RS18150	0.62	+0.2
3,928,378	+		RR42_RS18150	0.81	+1.1
3,928,378	+		RR42_RS18150	0.81	+0.1
3,928,378	+		RR42_RS18150	0.81	+0.5
3,928,378	+		RR42_RS18150	0.81	+0.3
3,928,378	+		RR42_RS18150	0.81	+0.3
3,928,379	-		RR42_RS18150	0.81	-0.3
3,928,546	+				-0.1
3,928,546	+				+0.3
3,928,591	+				-0.3
3,928,591	+				-2.6
3,928,591	+				+1.1
3,928,591	+				-0.6
3,928,591	+				-0.3
3,928,591	+				-3.0
3,928,591	+				+0.1
3,928,591	+				+0.3
3,928,591	+				+0.5
3,928,591	+				+0.0
3,928,592	-				-0.7
3,928,592	-				+0.3
3,928,592	-				-0.0
3,928,592	-				+0.4
3,928,592	-				+0.5
3,928,643	+				+0.0
3,928,643	+				-0.7
3,928,644	-				+0.0
3,928,659	+				+0.9
3,928,659	+				+0.9
3,928,660	-				+0.0
3,928,746	+				+2.3
3,928,746	+				+1.6
3,928,747	-				-0.2
3,928,763	+				+0.7
3,928,776	+				+0.3
3,928,776	+				-1.5
3,928,776	+				-0.3
3,928,776	+				-1.1
3,928,776	+				+0.4
3,928,776	+				+0.4
3,928,776	+				-1.1
3,928,777	-				-0.2
3,928,777	-				-0.0
3,928,777	-				-0.7
3,928,777	-				-0.3
3,928,990	+		RR42_RS18155	0.14	+0.4
3,928,990	+		RR42_RS18155	0.14	+0.3
3,928,990	+		RR42_RS18155	0.14	+0.7
3,928,990	+		RR42_RS18155	0.14	-0.1
3,928,990	+		RR42_RS18155	0.14	-0.8
3,928,990	+		RR42_RS18155	0.14	-1.2
3,928,991	-		RR42_RS18155	0.14	-0.2
3,928,991	-		RR42_RS18155	0.14	+0.8
3,928,991	-		RR42_RS18155	0.14	-0.6
3,928,991	-		RR42_RS18155	0.14	+0.3
3,929,044	+		RR42_RS18155	0.22	-1.5
3,929,044	+		RR42_RS18155	0.22	+0.4
3,929,087	-		RR42_RS18155	0.29	+0.1
3,929,087	-		RR42_RS18155	0.29	-1.1
3,929,098	+		RR42_RS18155	0.30	-2.1
3,929,099	-		RR42_RS18155	0.30	+0.1
3,929,099	-		RR42_RS18155	0.30	-1.5
3,929,114	+		RR42_RS18155	0.33	+3.3
3,929,115	-		RR42_RS18155	0.33	+0.1
3,929,150	-		RR42_RS18155	0.38	+0.7
3,929,185	+		RR42_RS18155	0.43	-0.3
3,929,186	-		RR42_RS18155	0.44	+0.7
3,929,186	-		RR42_RS18155	0.44	-0.4
3,929,186	-		RR42_RS18155	0.44	-0.6
3,929,186	-		RR42_RS18155	0.44	-1.7
3,929,225	+		RR42_RS18155	0.49	+0.7
3,929,225	+		RR42_RS18155	0.49	+1.5
3,929,225	+		RR42_RS18155	0.49	-0.3
3,929,225	+		RR42_RS18155	0.49	+0.9
3,929,225	+		RR42_RS18155	0.49	-0.6
3,929,225	+		RR42_RS18155	0.49	-0.9
3,929,226	-		RR42_RS18155	0.50	+0.3
3,929,226	-		RR42_RS18155	0.50	-0.7
3,929,326	+		RR42_RS18155	0.65	+0.0
3,929,327	-		RR42_RS18155	0.65	+0.1
3,929,327	-		RR42_RS18155	0.65	-1.5
3,929,327	-		RR42_RS18155	0.65	-0.8
3,929,327	-		RR42_RS18155	0.65	-0.9
3,929,341	+		RR42_RS18155	0.67	+0.1
3,929,341	+		RR42_RS18155	0.67	-0.8
3,929,341	+		RR42_RS18155	0.67	-0.3
3,929,341	+		RR42_RS18155	0.67	+0.5
3,929,342	-		RR42_RS18155	0.67	-1.9
3,929,342	-		RR42_RS18155	0.67	+0.2
3,929,344	+		RR42_RS18155	0.67	-1.7
3,929,344	+		RR42_RS18155	0.67	+0.7
3,929,345	-		RR42_RS18155	0.67	+0.2
3,929,345	-		RR42_RS18155	0.67	-0.3
3,929,347	+		RR42_RS18155	0.68	+0.3
3,929,347	+		RR42_RS18155	0.68	+1.6
3,929,347	+		RR42_RS18155	0.68	-1.3
3,929,348	-		RR42_RS18155	0.68	+2.0
3,929,418	-		RR42_RS18155	0.78	+0.8
3,929,419	+		RR42_RS18155	0.79	+0.9
3,929,419	+		RR42_RS18155	0.79	-1.5
3,929,419	+		RR42_RS18155	0.79	+2.4
3,929,420	-		RR42_RS18155	0.79	-1.4
3,929,420	-		RR42_RS18155	0.79	-0.5
3,929,420	-		RR42_RS18155	0.79	-0.0
3,929,797	+				-1.5
3,929,797	+				+0.1
3,929,798	-				-1.3
3,929,798	-				+0.3
3,929,864	-				-1.1
3,929,892	+				+0.4
3,929,892	+				+0.5
3,929,893	-				+1.7
3,929,944	+				-0.6
3,929,962	+		RR42_RS18160	0.10	-0.5
3,929,963	-		RR42_RS18160	0.10	+0.9
3,930,109	+		RR42_RS18160	0.19	-1.9
3,930,109	+		RR42_RS18160	0.19	+0.4
3,930,109	+		RR42_RS18160	0.19	-1.3
3,930,110	-		RR42_RS18160	0.19	-1.1
3,930,110	-		RR42_RS18160	0.19	+0.4
3,930,110	-		RR42_RS18160	0.19	-1.6
3,930,213	-		RR42_RS18160	0.25	-2.1
3,930,445	-		RR42_RS18160	0.38	-0.2
3,930,448	+		RR42_RS18160	0.38	-0.2
3,930,448	+		RR42_RS18160	0.38	+0.4
3,930,448	+		RR42_RS18160	0.38	+0.1
3,930,448	+		RR42_RS18160	0.38	-3.3
3,930,448	+		RR42_RS18160	0.38	-1.2
3,930,449	-		RR42_RS18160	0.39	-0.5
3,930,449	-		RR42_RS18160	0.39	-0.3
3,930,501	+		RR42_RS18160	0.42	+2.3