Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17735

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,835,598	+		RR42_RS17730	0.51	-0.5
3,835,598	+		RR42_RS17730	0.51	-1.0
3,835,646	+		RR42_RS17730	0.59	-0.8
3,835,924	+				-1.0
3,835,924	+				-0.5
3,835,925	-				-0.8
3,835,925	-				-2.1
3,835,925	-				+0.5
3,835,957	-				-1.6
3,836,023	-				-1.1
3,836,118	-				+0.7
3,836,118	-				-0.8
3,836,118	-				+0.2
3,836,172	-				-0.2
3,836,184	-				+0.6
3,836,217	+				-1.4
3,836,217	+				-1.4
3,836,218	-				+0.9
3,836,218	-				-2.1
3,836,236	+				-0.5
3,836,237	-				-0.5
3,836,282	+				+0.2
3,836,293	+				-2.5
3,836,318	+				-3.1
3,836,318	+				+1.6
3,836,319	-				-0.7
3,836,462	+		RR42_RS17735	0.15	-1.4
3,836,462	+		RR42_RS17735	0.15	-4.0
3,836,463	-		RR42_RS17735	0.15	+0.2
3,836,484	+		RR42_RS17735	0.18	-0.9
3,836,790	+		RR42_RS17735	0.65	-0.1
3,837,279	+		RR42_RS17740	0.42	-1.1
3,837,280	-		RR42_RS17740	0.43	+0.4
3,837,390	+				-0.7
3,837,397	-				-0.6
3,837,507	-				+0.7
3,837,507	-				+0.5
3,837,507	-				-0.4
3,837,507	-				+0.5
3,837,551	-				+0.5
3,837,560	+				-0.7
3,837,636	-				+0.1
3,837,819	+		RR42_RS17745	0.40	-0.6
3,837,819	+		RR42_RS17745	0.40	-0.2
3,837,820	-		RR42_RS17745	0.40	+0.1
3,838,002	+		RR42_RS17745	0.78	-0.6
3,838,003	-		RR42_RS17745	0.78	+1.6
3,838,003	-		RR42_RS17745	0.78	+1.8