Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17670

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
3,822,749	+		RR42_RS17660	0.76	+0.6
3,822,749	+		RR42_RS17660	0.76	-1.1
3,822,749	+		RR42_RS17660	0.76	+0.2
3,822,749	+		RR42_RS17660	0.76	+1.9
3,822,749	+		RR42_RS17660	0.76	+0.4
3,822,988	+				-0.4
3,822,988	+				+0.2
3,822,989	-				+0.5
3,822,989	-				-0.7
3,823,056	-		RR42_RS17665	0.16	+0.5
3,823,154	+		RR42_RS17665	0.31	+1.1
3,823,318	+		RR42_RS17665	0.57	+3.2
3,823,550	+				+1.2
3,823,550	+				+1.6
3,823,550	+				-1.8
3,823,726	+				-1.0
3,823,726	+				+1.4
3,823,727	-				+0.1
3,823,727	-				-0.2
3,823,849	+		RR42_RS17670	0.29	+0.1
3,823,849	+		RR42_RS17670	0.29	+1.1
3,823,850	-		RR42_RS17670	0.29	-0.6
3,824,044	+		RR42_RS17670	0.62	+0.1
3,824,044	+		RR42_RS17670	0.62	-2.6
3,824,044	+		RR42_RS17670	0.62	+1.4
3,824,045	-		RR42_RS17670	0.62	+0.1
3,824,045	-		RR42_RS17670	0.62	-3.6
3,824,170	+		RR42_RS17670	0.83	-0.3
3,824,170	+		RR42_RS17670	0.83	-0.1
3,824,170	+		RR42_RS17670	0.83	+0.9
3,824,171	-		RR42_RS17670	0.84	+1.7
3,824,171	-		RR42_RS17670	0.84	+0.3
3,824,174	-		RR42_RS17670	0.84	-0.1
3,824,174	-		RR42_RS17670	0.84	-0.1
3,824,257	+				+2.0
3,824,257	+				+0.1
3,824,257	+				+2.2
3,824,258	-				-0.2
3,824,258	-				-0.7
3,824,258	-				+1.1
3,824,258	-				+0.2
3,824,258	-				-0.1
3,824,259	+				+1.8
3,824,259	+				+2.8
3,824,259	+				+0.5
3,824,259	+				-0.8
3,824,259	+				-0.2
3,824,259	+				+0.1
3,824,260	-				+0.5
3,824,677	+		RR42_RS17675	0.28	+0.5
3,824,677	+		RR42_RS17675	0.28	+0.2
3,824,677	+		RR42_RS17675	0.28	-0.8
3,824,677	+		RR42_RS17675	0.28	+1.6
3,824,677	+		RR42_RS17675	0.28	-0.2
3,824,677	+		RR42_RS17675	0.28	-1.3
3,824,678	-		RR42_RS17675	0.28	-0.1
3,824,819	+		RR42_RS17675	0.39	+0.4
3,824,820	-				+1.2
3,824,820	-		RR42_RS17675	0.39	-0.4
3,825,115	+		RR42_RS17675	0.60	+0.3
3,825,116	-		RR42_RS17675	0.60	+0.0
3,825,116	-		RR42_RS17675	0.60	+1.0
3,825,116	-		RR42_RS17675	0.60	+0.8
3,825,116	-		RR42_RS17675	0.60	-0.5
3,825,188	+		RR42_RS17675	0.65	+0.3
3,825,194	-		RR42_RS17675	0.65	-0.0
3,825,194	-		RR42_RS17675	0.65	-0.7
3,825,194	-		RR42_RS17675	0.65	-1.4